HsaINT0100304 @ hg19
Intron Retention
Gene
ENSG00000015479 | MATR3
Description
matrin 3 [Source:HGNC Symbol;Acc:6912]
Coordinates
chr5:138611810-138614097:+
Coord C1 exon
chr5:138611810-138611839
Coord A exon
chr5:138611840-138614015
Coord C2 exon
chr5:138614016-138614097
Length
2176 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTGCTTGTCTTCCTTTTTAGGAT
3' ss Score
13.23
Exon sequences
Seq C1 exon
AGAGGCTGGCTGTGGCAGATGCAACTGCAG
Seq A exon
GTGAGTGCAACCCCTTCAGCTCTCTTGGCTCCAGCTGTAGGCAGCTGCCTAGGTTGTCTTGTACCTAGGCAAGTGTTACACTGCTGGGAGAACAGCAGCCAATAGCTGGTTGGCATTCTGGCCCTGGTTCATGCCAACTCTTGTGTTGACTACCCCAGGATGCCAGCATAGTTGCTTATCCATTAAGGCAGGCGTGTTTTTTGGCTTCCCTGGGCCACATTGGAAGGATAAGAATTGTCTTGGGCCATACATAAAATATAGTAACACTAACGATAACTGATAGCTAAATTTAAAAAAAAATTGCCAAAAATAACTCCTCATAATGTGTTAAGAAAGTTTACCAATTTGTGTTGGGCTGCGGGTTGGAAAAGCTTGCATTAAGGTTTAATCTGTGAGAGCATGACTTTTTGCAGAGAATAAGTCCAGACCTTCCTGAATAGTTCTGGTCCAACAGGTTTGGGTAGCATGAAGTTACTTGAATCATACCTTGGAAACAGAACAAAGCTAATGGGAAGAGGGGGTTGGTAAAAATAGACGGAAAAGTCACACCTTTATTTTTAGTGCCTACCAAGGGCTCAAAGGGGGCCAGATACAATGGGATTTTTGCTAATTTCACTGAAATTAAAGTCCATGGCTCCTACTACCCACCATAAAAGCTAGTCATGACACCCTTTGTAGAGGGATGGATTCCCTATTAGGGAAACATTGATGGTAATTCACTTTAAAATTATGGGCATTCTCTAGCTGTTTAATAAAATATTAAAATATTGATTGAGGGGGCTCTGGGAACTGAACAACTACAACCACACTAATTTCTCCTTTGGGCTGACAGTATATTTGCTTTAGTTGCTTACTGATTTTCAGAAATGAACAGTTGTTGCCCCATTAAAGTGGTAGATATTGAGTTCCCTTTGTAGTAATTTTGTTTTGGAATGCTTTTTCCCAAGTAGTTGGGATGATAGGTGTGTGCCACCACAACCAGATAATTTTTTTTTTTTTAATTTGTAGAGACAAAGTCTCATTATGTTGCCCAGGCTTTAGTAGAGACAAGGTTTCACGACGTTGTCCAGGCTGGTCTCGAACTCCTGGGCTCAAGTGATCTCCTGCCTCTCAAAGTGCTGGGGTTACAGGCATGAGCCACTGCACCGTGCCTGGCCTGGAATGCTAATCTTTTGAGAAGAGATGACCCTCGGTTGCTGTGAAAAGTGACATACTAGTTTCCACAGGAGGAAATGGGGAGGATGTTGGGGGGCAGGGGAGTTGTTTATCAAAGCTTGTTTTGTTAGATCAGTTGGCATTCCCTTAATAGGATTCTCTCAACTAAATGTGAGTGCTTTGTGTGAATGCCTCAACTGTGAATAGCCTTTTACATATGGGGTCTTAAGGCTAGTGATATCTGTAGGGCTTGGGGGATGGTTAGCTTTATAGTACTATAGGCAGGGAAAAGGCAAATAATGGTAAATAAAATAATTCCTGAGGCTATAGAAATTGGGGTAAATGGCAAGCAGCATTCTATTTCCATCTCTCCAGATAAGGGTCCTTAGGAGCTGCTATTTTAGACCAGGGTGCCAAACATTCAAATTCATGGGAAATATATCATGTCTGCTCGTCTTTTTTTTTTTTTTTTTTTAATTGACAGTAATTGTATATGTTATATGGGGTACAACATGAGGTTTTCATACATGTTTACATTGTGGAATGAGTAAATCATGCTAGTTAACACATCTAGCACCTCACATACTTATATTTTGTTGTGGTGAAAACATTTAGTATCTTTTAGCAATTTTGAAATATACAGGCCAGGCACGGTGGCTCGCACCTGTATTCCCAGCACTTTGGGAGGCTGAGGTGGGAGGATCATTTGAACCCAGGAGTTTGAGACAAGCCTGGGCAACAGAAAGAGATCTCATCTCTATAAAAAACAAAAAAGAAATTAGGTGGGTGTGTTGGCATGCACCTGTAGTCCCAGCTGCTTGGGAGGCTAAGCTGGGAGGATCACTTGACCCAGGAGATTGAGACTACAGTGAACCATGGTCATGCCACTGCACTCAGTCTAGACAGAGTGAGACCCTATCTCAAAAAATATATATATATATATACACACACACACACAATGCATTGCTATTTATTATATTCTGTGTACTAGATCACTAAGTTTGCTTGTCTTCCTTTTTAG
Seq C2 exon
GATGACTTGAAAGTAGGGCATCCTTCACCCATCTGAAGGGAGGAAATAGTGGCAGGTGACAGTCTGCATGTGCAGTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000015479-MATR3:NM_199189:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.917 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)