HsaINT0100304 @ hg38
Intron Retention
Gene
NA
Description
NA
Coordinates
chr5:139276121-139278408:+
Coord C1 exon
chr5:139276121-139276150
Coord A exon
chr5:139276151-139278326
Coord C2 exon
chr5:139278327-139278408
Length
2176 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TTGCTTGTCTTCCTTTTTAGGAT
3' ss Score
13.23
Exon sequences
Seq C1 exon
AGAGGCTGGCTGTGGCAGATGCAACTGCAG
Seq A exon
GTGAGTGCAACCCCTTCAGCTCTCTTGGCTCCAGCTGTAGGCAGCTGCCTAGGTTGTCTTGTACCTAGGCAAGTGTTACACTGCTGGGAGAACAGCAGCCAATAGCTGGTTGGCATTCTGGCCCTGGTTCATGCCAACTCTTGTGTTGACTACCCCAGGATGCCAGCATAGTTGCTTATCCATTAAGGCAGGCGTGTTTTTTGGCTTCCCTGGGCCACATTGGAAGGATAAGAATTGTCTTGGGCCATACATAAAATATAGTAACACTAACGATAACTGATAGCTAAATTTAAAAAAAAATTGCCAAAAATAACTCCTCATAATGTGTTAAGAAAGTTTACCAATTTGTGTTGGGCTGCGGGTTGGAAAAGCTTGCATTAAGGTTTAATCTGTGAGAGCATGACTTTTTGCAGAGAATAAGTCCAGACCTTCCTGAATAGTTCTGGTCCAACAGGTTTGGGTAGCATGAAGTTACTTGAATCATACCTTGGAAACAGAACAAAGCTAATGGGAAGAGGGGGTTGGTAAAAATAGACGGAAAAGTCACACCTTTATTTTTAGTGCCTACCAAGGGCTCAAAGGGGGCCAGATACAATGGGATTTTTGCTAATTTCACTGAAATTAAAGTCCATGGCTCCTACTACCCACCATAAAAGCTAGTCATGACACCCTTTGTAGAGGGATGGATTCCCTATTAGGGAAACATTGATGGTAATTCACTTTAAAATTATGGGCATTCTCTAGCTGTTTAATAAAATATTAAAATATTGATTGAGGGGGCTCTGGGAACTGAACAACTACAACCACACTAATTTCTCCTTTGGGCTGACAGTATATTTGCTTTAGTTGCTTACTGATTTTCAGAAATGAACAGTTGTTGCCCCATTAAAGTGGTAGATATTGAGTTCCCTTTGTAGTAATTTTGTTTTGGAATGCTTTTTCCCAAGTAGTTGGGATGATAGGTGTGTGCCACCACAACCAGATAATTTTTTTTTTTTTAATTTGTAGAGACAAAGTCTCATTATGTTGCCCAGGCTTTAGTAGAGACAAGGTTTCACGACGTTGTCCAGGCTGGTCTCGAACTCCTGGGCTCAAGTGATCTCCTGCCTCTCAAAGTGCTGGGGTTACAGGCATGAGCCACTGCACCGTGCCTGGCCTGGAATGCTAATCTTTTGAGAAGAGATGACCCTCGGTTGCTGTGAAAAGTGACATACTAGTTTCCACAGGAGGAAATGGGGAGGATGTTGGGGGGCAGGGGAGTTGTTTATCAAAGCTTGTTTTGTTAGATCAGTTGGCATTCCCTTAATAGGATTCTCTCAACTAAATGTGAGTGCTTTGTGTGAATGCCTCAACTGTGAATAGCCTTTTACATATGGGGTCTTAAGGCTAGTGATATCTGTAGGGCTTGGGGGATGGTTAGCTTTATAGTACTATAGGCAGGGAAAAGGCAAATAATGGTAAATAAAATAATTCCTGAGGCTATAGAAATTGGGGTAAATGGCAAGCAGCATTCTATTTCCATCTCTCCAGATAAGGGTCCTTAGGAGCTGCTATTTTAGACCAGGGTGCCAAACATTCAAATTCATGGGAAATATATCATGTCTGCTCGTCTTTTTTTTTTTTTTTTTTTAATTGACAGTAATTGTATATGTTATATGGGGTACAACATGAGGTTTTCATACATGTTTACATTGTGGAATGAGTAAATCATGCTAGTTAACACATCTAGCACCTCACATACTTATATTTTGTTGTGGTGAAAACATTTAGTATCTTTTAGCAATTTTGAAATATACAGGCCAGGCACGGTGGCTCGCACCTGTATTCCCAGCACTTTGGGAGGCTGAGGTGGGAGGATCATTTGAACCCAGGAGTTTGAGACAAGCCTGGGCAACAGAAAGAGATCTCATCTCTATAAAAAACAAAAAAGAAATTAGGTGGGTGTGTTGGCATGCACCTGTAGTCCCAGCTGCTTGGGAGGCTAAGCTGGGAGGATCACTTGACCCAGGAGATTGAGACTACAGTGAACCATGGTCATGCCACTGCACTCAGTCTAGACAGAGTGAGACCCTATCTCAAAAAATATATATATATATATACACACACACACACAATGCATTGCTATTTATTATATTCTGTGTACTAGATCACTAAGTTTGCTTGTCTTCCTTTTTAG
Seq C2 exon
GATGACTTGAAAGTAGGGCATCCTTCACCCATCTGAAGGGAGGAAATAGTGGCAGGTGACAGTCTGCATGTGCAGTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000280987:ENST00000394800:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains