HsaINT0100404 @ hg19
Intron Retention
Gene
ENSG00000166987 | MBD6
Description
methyl-CpG binding domain protein 6 [Source:HGNC Symbol;Acc:20445]
Coordinates
chr12:57922449-57922792:+
Coord C1 exon
chr12:57922449-57922501
Coord A exon
chr12:57922502-57922728
Coord C2 exon
chr12:57922729-57922792
Length
227 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
3' ss Seq
ATCTGTGCCCCTTATTGCAGCCC
3' ss Score
8.93
Exon sequences
Seq C1 exon
GTGCCCCCGGGAGTAGTCAGAAAGTCTCGTCGTGGCCGTAGGAGAAAATACAA
Seq A exon
GTGAGTGTTGGGCCTACTATAGTGCTGGCCTTTGCCTACTTCTTTTTGGTTTGGACAGTTCTAATGTCCAAATAGTGGCTTGGTTTTCAAAAGGGCAGATTCTTATTTGAATATGAATAAGGATATTATGCCTTTACTATCCAAATGTAGAAAGTTTCCCACCCAAACTTCTGAAATTCACCTGGTGCTTGGGAGCTGTTCCTGATCATCTGTGCCCCTTATTGCAG
Seq C2 exon
CCCTACCCGGAACAGCAATAGCTCCCGCCAGGACATTACCTTGGAACCCAGCCCTACAGCCCGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000166987-MBD6:NM_052897:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)