HsaINT0102937 @ hg19
Intron Retention
Gene
ENSG00000227772 | MICB
Description
MHC class I polypeptide-related sequence B [Source:HGNC Symbol;Acc:7091]
Coordinates
chr6:31473920-31475077:+
Coord C1 exon
chr6:31473920-31474207
Coord A exon
chr6:31474208-31474798
Coord C2 exon
chr6:31474799-31475077
Length
591 bp
Sequences
Splice sites
5' ss Seq
CAGGTACCG
5' ss Score
10.05
3' ss Seq
CTCTGCCCTTTCTTCTCCAGTGC
3' ss Score
11.17
Exon sequences
Seq C1 exon
GCTTGCATTCCCTCCAGGAGATTAGGGTCTGTGAGATCCATGAAGACAGCAGCACCAGGGGCTCCCGGCATTTCTACTACGATGGGGAGCTCTTCCTCTCCCAAAACCTGGAGACTCAAGAATCGACAGTGCCCCAGTCCTCCAGAGCTCAGACCTTGGCTATGAACGTCACAAATTTCTGGAAGGAAGATGCCATGAAGACCAAGACACACTATCGCGCTATGCAGGCAGACTGCCTGCAGAAACTACAGCGATATCTGAAATCCGGGGTGGCCATCAGGAGAACAG
Seq A exon
GTACCGACCCTGGCCAGGGGCTCTACTGTTCCCGCAATTCTGCTAGAGTTGCCTCGCCTCCCAGCTCTGTCCGGGGAAACCCTCCCTGTGCTATGGATGCAGGCGTTTCCTGTTGGCATATTGTGTCCTGATTTGCCTCTCCTGTTAGAGCCATTGGATAAAGACAGTGGGTCTGGGACTGAACTGTCCAGTGTTGTAATCTGGGAAAGCAGTGGGCCCTCTGACAGAAGCCTGAGCCTGGTGTGGGAGTTAGGCAGGAGAGGAAGCCCTCAGGGCCAGGGCTGCCCCCTCTGCCTCCCGGCCTGCCCATCCCGGAGAGTTCCCTCCTGGCCCCATGACCCAGGAGTCCACCCTTGACATCCCCCTCCTCAGCATCAATGTGGGGATCCCAGAGCCTGAGGCCACAGTCCCAAGGCCCATCCTCCTGCTAGCCTGGAGGAATTAGGCCCCAGGGTGAGGACAGACTTACAGAAGGTCCGGTATCTGTGAGGGATTCAGCCAGAGTGAGAACAGTGGAGAGGAGCAGCCCTGTTCCCTGCATCTCCCTTAGAGGGGAGCAGGGCTTCACTGGCTCTGCCCTTTCTTCTCCAG
Seq C2 exon
TGCCCCCCATGGTGAATGTCACCTGCAGCGAGGTCTCAGAGGGCAACATCACCGTGACATGCAGGGCTTCCAGCTTCTATCCCCGGAATATCACACTGACCTGGCGTCAGGATGGGGTATCTTTGAGCCACAACACCCAGCAGTGGGGGGATGTCCTGCCTGATGGGAATGGAACCTACCAGACCTGGGTGGCCACCAGGATTCGCCAAGGAGAGGAGCAGAGGTTCACCTGCTACATGGAACACAGCGGGAATCACGGCACTCACCCTGTGCCCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000227772-MICB:NM_005931:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCAAGAATCGACAGTGCCCC
R:
GTTCCATTCCCATCAGGCAGG
Band lengths:
349-940
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)