MmuINT0098792 @ mm9
Intron Retention
Gene
ENSMUSG00000054005 | Mill1
Description
MHC I like leukocyte 1 [Source:MGI Symbol;Acc:MGI:2179988]
Coordinates
chr7:18848277-18851441:+
Coord C1 exon
chr7:18848277-18848552
Coord A exon
chr7:18848553-18849933
Coord C2 exon
chr7:18849934-18851441
Length
1381 bp
Sequences
Splice sites
5' ss Seq
CAGGTACTG
5' ss Score
9.04
3' ss Seq
CTCACTTCACCTTCTCCCAGGTT
3' ss Score
8.61
Exon sequences
Seq C1 exon
ATCTTCACATCCTCCAGGCAACCTTCGGCTGTGAGCTTCAAAGAAATGGAAGCACTAGAGGCTTCTGGAAACTGGGCTATGATGGGCAGAACTTCCTCACCTTTGACCAGAAGACTCTCACATGGACAGTGGATGGACCTTCCACCCAGAAGAACAAGACATTCTGGAAGACACGTGCACCCAGAGCTGATCTAGTTAAGACATTCTTGGATGACATATGTCCTGCTCAGCTCCAGAGATACCTTGCTTCCTTGAGAAATGGTCTGCTGAATACAG
Seq A exon
GTACTGACTGTCACCAGAGTTGGTTTCCAGAACCCAGGGGAACATTCCTGTGGCTAAGTGGCTCCTTCCATGGTATTTGTGTGTGTGGGGGGGGGTGGATTCTCATTTGTGTGTACAATGGTGGCACAGCCTAAGGTAATGCCTGGAAGTTGGGACACAGAGTCTTCTTAGTTTCCTCAGATCAGAAAGGAGGGGTTCCCATATGTTACCTAGATCTCAGACACAAGGGCCTCACATGCAGAATAAAGAGCACTCCCTTCTTTCCAACAACCCCCTGCTCTAGGATAGAGATTGTCCTGGAGGAGGGGAGAGCACTGGGTGGGACTGGGTGGGTTCAGAGCCATCCTCACTAGGAACTAAAATAGGAGAGGAGGATGCAACCCTGGAGCTGTGCTACAGATCAAACACAAGCTACCCCATATCACATAACCTGGTCAAGGTCCTCTTACTGTGACACAACTCACACTTTTAAAAGGTCAACCTGGGGCTGGAGAGATGACTCTGCAGGTAAGAGCTCTAGTTGCTCTTGCAGAGGACCCACGTTGAATTCACAGCACCCAGGTGGTGGCTTAAAACCATTTGTAACTCCAGTTCAAATTCAGTGCCCTCTGTTGACTTCCATGGGCACTAGGCATACACATGGTACACACAATTCATGCAGGCGAAATAGTCATACACATAAAACAAAGTAAATAAATATAAAATATTTAAAAGGCTATGTTTTCTTTTTAAATGGCTTTGTCTTTTAAAACAGAGTCTCATAGTGCCCATCATTCACACACACCCATCCCCGACCTCTACTTTCCTAGTGCTATAATGATAGGCATGTATCACCCAGTCTGGGATCTGAAAGGTGAAGTTTAAAGCTTTGGCCCAGTGACAGAAAATGAAAGGTTGCCCTGAGAAATCTGTGGAGGAAGAAAGACAAGAGGCAGACACTAGTCATCAGTCCTGGGTCAATTCCAGAATCAGGGCTACAGTCAGTTGACTCTACTTTGGGAGTCCCTCAATTGTCCCTTAAGGCTTGTAGAGCTGGCTTTAAAATAGAAATAAGAACATCCCACCCAGGTCAGATTGTAGCCCCTGTAATGTTGAGCCTCTGTCCTCTCAGTACCTGTTGCTCCCTGTGCCTGAATGAGGAACTGTTGACCCCTGAGAGCAGGGACATCATGTTCTTTCATCGTGGAACTCAGGGACTGACCCTAAAGAGCATCAGGAGCCAGTGGAACTGAGTCTCCATCTCCCACAATCCTACAGTCACTGGGAGCCTCTAGGGAGGGTAGATTGGAGGCAAATATCAACAGGGAGGTTCTTCTGGGCCACCCACCATGCTGAATTAGAAGGATCTTCACCTTCACTGACTCACTTCACCTTCTCCCAG
Seq C2 exon
GTTTCCCAAAGGTGATTGTGACCTTCAGGAACTATCCAGTGGGCAGGATCACACTGACATGCCGGGCTTTTCGTCTGTATACCCGTGTGGCCACCCTGACCTGGCTTCAGTATAGAAAGCCAGTACAGCAGAAAACCTTTGGATCTGAAACTATCCTGCCCAGTGGGGATGGCACCTACCAGGCCTGGGTGTCCATTCGGGTTCTTCCTGGACAGGAATCACAGTTCAGCTGCAACTTGAAGCACGGCAACCACAATATCAATGAACCTGCTGCCACTGAGGCCCCTGTCTATGGTGCGAGAAGAGAACAACCTCCCACCTCAGGTGTGGGAAGCAGGGTCGGGAAAAGCCTGTGGAGTGCAATGACTACAGCTCTCGTGGTGATCTCCTGGACATTAAGCCAGAAACTGATGGGGCCTCTACTCTGGTTCTGCTCTGGTGGCTTCTGCTCTTTTCTACAGTGTTGGTAGTTCAAACCCTTGCCTAGAGCAGCAAGAACACGCAGGAGGACAGCAAGAGACCAGGTGAACATTCCTGCGGGCTGTAGCAGAAGGTGGCAGGAGTGGTGAGAGGCCTTTTCTTCTTTTTGTAAATTGTACAGATAGAAAGGTAGTCACACAAGCACCATTTTACCACACTGGTGAATGGAGAGCCCTAAAGAGTTACCATACCGTACCCTAACCTGCCCTGCTGTTGGGAGGCACCGCCCCCTGGTGGAAGTGCAATGCTACTTCCGATGTGTTCTTATATATATTATGAAATACAGGGGCAAAGAAGCAGGCTAGACATCCACAACAAAGTACGAGTTGTGGCAAACTACACATGCCCCTGCCTCTTCACCAAATACATAGAAAACAAACAGCCAAACAAGACAGAGGAAAAACTGAGAGTCCAAGAGATGATCGAGAGTCATTTTACCAGATGATGATAACTATTCCAGTTTTATCTTGATTCAAACACGGGAATTTCTCCTCAAAAGATATCCATGAAGCATCTGGGGGAGATAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACACGTACACAAACACACATATATAAGCATTTAAAAGATTTTGAAGATATCTTATTCTCTATGGTCTCTTTAAATACATACTAATAATCAAAAGGATTCTTAGTATCCCGAGATACAGGATTTCTGCTCTGTCTTCTAAATTAAACTACTATTCTTCTGCCTTCATTGTGCCAGCCTAAAATGATCACAGCAAAACTTGTTAAATGTTAATATGCCTCCACAATAAAAGAAGAACAAGTTATCCCAACCAATTTTATTTTTAAAATAAAATATAAATTAAAATTAGAAATTATATTACTATAATGGTTTTAAAAAATAAAAATGTTACAAAAATAAAGATATATAGTATAAAAATAATAAAATGTTATAAAAATATTAAAATTTATTTTAGTAAAGTTTATGCATGAAGATTAAATGGATATATGGTTACAGAATAAAACACTGAAATATTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054005-Mill1:NM_153749:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=NA C2=0.071
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PD(49.7=94.6)
A:
NA
C2:
PF0765410=C1-set=WD(100=49.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACCTTCCACCCAGAAGAA
R:
GAAGAACCCGAATGGACACCC
Band lengths:
350-1731
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: