HsaINT0104178 @ hg38
Intron Retention
Gene
ENSG00000130675 | MNX1
Description
motor neuron and pancreas homeobox 1 [Source:HGNC Symbol;Acc:HGNC:4979]
Coordinates
chr7:157004853-157006639:-
Coord C1 exon
chr7:157006479-157006639
Coord A exon
chr7:157005874-157006478
Coord C2 exon
chr7:157004853-157005873
Length
605 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGC
5' ss Score
9.1
3' ss Seq
ACGCCCGCTTGTGCCCGCAGGTG
3' ss Score
11.21
Exon sequences
Seq C1 exon
CCCAGGCGCAGTCGAACCTCCTGGGGAAGTGCCGCCGGCCGCGCACCGCCTTCACCAGCCAGCAGCTGCTGGAGCTGGAGCACCAGTTCAAGCTCAACAAGTACCTGTCGCGGCCCAAGCGCTTCGAGGTGGCCACCTCGCTCATGCTCACCGAGACCCAG
Seq A exon
GTGCGCGCCCTCCCCGCCCCCGACGCATCCCGGCCTCCCAGGGGACACTGTTACCTTTGCACTTGTGACCCACGGGCGGTCTGAGGCATCTAGCGCTGCGCCTCGACGGTTCAGACGGCGGGCGCACGGGTTCATCTAAGGTGCCCAGAGCGCCGATTCAGTAGCTTCGGGTGGGGCCCAAGAATCAGCACTTAACCACCCCTCCTTTCATTCTGAAGAAGGTGATCCCCAGGCCGCATTCGAGAAATTTTGTTCCAGAAAGAGAGGAGGGAACATCCTGAGATTTACCGCGACGTAGCCAGCTGCCCTGACCCTTCCTCCGCAGACGGAGGGCGCGGGTAGAAAAGTCCCCGGCCTGGGTCGTTGGGGACATAGTCCTAGCTCCCACGGAGCTCCAGCCCAGCTCTGGGGTTTGCTGCTGAGTGGGGGGTTGCGGGGAGGAGGAAGCTACGAGCCCCCTCCCCATTCTGCTTCTAAGTCGTCTCACCCTGAGGCCATTCCAGGGCCGACCCAATGGGGCCCAGGCGCACGCGGCCGGGGGACTCCGGGGACAGGAAGCCCTGGGGTGGCGGTGGCCGGTTTCTCACGCCCGCTTGTGCCCGCAG
Seq C2 exon
GTGAAGATTTGGTTCCAGAACCGGCGGATGAAATGGAAACGCAGCAAAAAGGCCAAAGAGCAGGCGGCGCAGGAAGCGGAGAAACAGAAGGGCGGCGGCGGGGGCGCGGGGAAGGGCGGCGCGGAGGAGCCGGGAGCCGAGGAGCTGCTGGGGCCGCCAGCGCCCGGAGACAAGGGCAGCGGACGCCGCCTGCGGGACTTGAGGGACAGTGACCCCGAGGAGGACGAGGACGAGGACGACGAGGACCATTTCCCCTACAGCAACGGCGCCAGCGTCCACGCCGCCTCCTCCGACTGCTCCTCGGAGGACGACTCGCCGCCCCCGCGGCCCAGCCACCAGCCCGCGCCCCAGTAGGAGCCCCGCGGCCCAGCAGGTGCGGCGCGCACGGAGCGCCCCGGCCGGCGGCTTCTCCCGGAGGCCCCGGCGCCCGCACCCACCCGGCCCGGCCCCGAGAGCAGGCTCGACCGCCGCCCCATGGACCCCTCGCCCAGGCCGGGGCTGGAGGGATTCGGCCGCGGCTCCGGTCCTGGGCGCTTCCCTTTTAAGCAAGGGCGCCTCACCTGCTCTTCAAGAAACAGCGAGAGGGAGACCCAGGGGGCTGAAACTTGAACTCTGGTTCTTTTAAAATTAATTTTGGTTGGTGTTGGGGGAGGCGCGAGTGCGTGTGAGAAGAACCGACCCACCCCGCGCAAGGGGAAGCCTCCTGTCTCCCCTTTCCCCGCGTCCGAGAAGGCGGAAACCCACAGTGTTACCTGACTTATGAAACTTGAAACCGCCTCTGGAGCCGCCATTCTGCAGAGTATTTGGAAAAAGAAAAAAGGGTTTATGCTTACGTCTCTGGGGTCGGGGGGATTATGTCACGAGCGTTCAAACTGCTGGAAATCTCAAAACTGTACTGTCTTTATTTTTGTATATTGTATTTATATATAAAAAGAAACGTCTACGTATGCATGCTAAATTATTATTTAGCTTCTCCCATCGCCCACGATGGAATGTAAAATAAATTGGTTTTGTACTGGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130675:ENST00000252971:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.120 A=NA C2=0.878
Domain overlap (PFAM):
C1:
PF0004624=Homeobox=PU(95.5=77.8),PF088806=QLQ=PU(86.4=70.4)
A:
NA
C2:
PF0004624=Homeobox=PD(22.8=11.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCACCAGTTCAAGCTCAACA
R:
TGCTGTAGGGGAAATGGTCCT
Band lengths:
345-950
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development