HsaINT1023230 @ hg38
Intron Retention
Gene
ENSG00000235029 | MNX1-AS2
Description
MNX1 antisense RNA 2 [Source:HGNC Symbol;Acc:HGNC:40278]
Coordinates
chr7:157006307-157007132:+
Coord C1 exon
chr7:157006307-157006424
Coord A exon
chr7:157006425-157006876
Coord C2 exon
chr7:157006877-157007132
Length
452 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
TTTTTTTTTTTTTTGTCTAGGAG
3' ss Score
10.3
Exon sequences
Seq C1 exon
ACCCGAAGCTACTGAATCGGCGCTCTGGGCACCTTAGATGAACCCGTGCGCCCGCCGTCTGAACCGTCGAGGCGCAGCGCTAGATGCCTCAGACCGCCCGTGGGTCACAAGTGCAAAG
Seq A exon
GTAACAGTGTCCCCTGGGAGGCCGGGATGCGTCGGGGGCGGGGAGGGCGCGCACCTGGGTCTCGGTGAGCATGAGCGAGGTGGCCACCTCGAAGCGCTTGGGCCGCGACAGGTACTTGTTGAGCTTGAACTGGTGCTCCAGCTCCAGCAGCTGCTGGCTGGTGAAGGCGGTGCGCGGCCGGCGGCACTTCCCCAGGAGGTTCGACTGCGCCTGGGCTGGGGACCAAAGGGCAGTGAGGCCCACAGCCGGCTCCGGTCCTCGCCCCAGCCCCTCCCGTTGCTGCTTGTACCACTACACTCAAGGCCCCAGCGCCAAGGCCTGGCCCTGCAGAGGGCGGGGCTGTTCCCTCACTATCAGTGCCCACTCCCCAAGGAATGCGGACTCAGGACCACCAAGTGGAAATGGATAGTTTGGAGTTAATGAGACCAATTTTTTTTTTTTTTTTTGTCTAG
Seq C2 exon
GAGACGTCTGAGTGTCCCTGTTAAACAGGGCCCATCGCAGGAGGCTTCCTCTCCACAGGAGCCGGCTTTGGTAGCAGTGGATTGACCCAGAGGCAAGAGGAGAACTGAGGCCAGTCGGGGGCCAGGAAGGGAGGTTCCGGGAAGCCCAGGAGTTGAAGGCTGCAGTGAGCGAGACTGCACCCCTGCACTGTACCCTGGGTGACACAGCAAGACCCCATCTCTCAATAAATAAAAAATAATAAAATAATAAAATAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000235029:ENST00000429228:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCGAAGCTACTGAATCGGC
R:
TGAGAGATGGGGTCTTGCTGT
Band lengths:
342-794
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains