HsaINT0104905 @ hg19
Intron Retention
Gene
ENSG00000153029 | MR1
Description
major histocompatibility complex, class I-related [Source:HGNC Symbol;Acc:4975]
Coordinates
chr1:181019147-181031074:+
Coord C1 exon
chr1:181019147-181019422
Coord A exon
chr1:181019423-181024360
Coord C2 exon
chr1:181024361-181031074
Length
4938 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
AAAAACCCCTTTCCTTTCAGAGC
3' ss Score
8.9
Exon sequences
Seq C1 exon
GGTCTCACACTTACCAGAGAATGATTGGCTGTGAGCTGCTGGAGGATGGAAGCACCACAGGATTTCTGCAGTATGCATATGACGGGCAGGATTTCCTGATCTTCAATAAAGACACCCTCTCCTGGCTGGCTGTAGATAATGTGGCTCACACCATCAAGCAGGCATGGGAGGCCAATCAGCATGAGTTGCTGTATCAAAAGAATTGGCTGGAAGAAGAATGTATTGCCTGGCTAAAGAGATTCCTGGAGTATGGGAAAGACACCCTACAAAGAACAG
Seq A exon
GTAAAGAGAAAGAGAAGGCCTCATTCCCACATTGCCTGAACAACTGTTTTTATACGTAACTCTTTTAATCTAGGTTATATCCACTGTATCCTGAAAGCCATCTCTTTAGTTGGCCTATTGTGATCTCATGGCTAGAGCCCCCACGAAAACTTTCCCTGGTTACTTTTGAGCAGCATCTTGACAAGATTTGACAGTTCCCCTTGTCTTGACAGAGTGGAGTACCTCCAAGGGCACCTTGTTTTTAGGGATCTATTGAGGCAAATTCTTCCATTCCGTCAATGATAAGCTGGGAAATTCTTTGGGAGATAGAGCAATTCTTACAAACTGTTTAGTTAACAAAGGGCTCACACACCACCAGTAGGAGTAAAAATCTGGATTTACCAAGACAAACAGAAGGTCTCTGCTTTACTAAAGGATTAATGAGGTTGGGCATGATGGCTCATGCCTGTAATCCTAGCACTTTGGGAGGCTGAGGCAGGAGGATTGCTTAAGGCCAGGAGTTTAAGACTGGCCTGGGTAACATTGTGAGACCCTGTCTCTATTAAAAAAAAAATTAGCTGAGCATGGTGGCACATGACTGTAGTCCCAGATACTCAGGAGGCTGAGGTGGGAGGATCTCTTGAGCCTGGAAGGTCAAGGCTGCAGTGAGCCATGATCATGATCAGCCTGGGTCACAGAGCAAGACCCTATTTAAAAAAAAAAAAAAGTATTAATGATAAGATTCCTTTCAGCAAAGAGCTCCTCTTATACCTTAAAGATATGATTCAGTTGGTCAACTTTTAGTTCATATAGAACTTTTCATGTATGGTCTTGTTATTCAAAATTAATCACACCTGTATGATGCTACAGGAAACTCCTAGATACAATGTGTGTGGGAAGAGTATGGGAAGCTCCCCTCTCCAGGCCTCTGTCTACATTCAGTGTCCTAATGGATTTTCAACCTTTTGGTCAAAACACACTCCTAAAAAAACAAACAAAAAAAAAAAAGAAAAGAAAAAACACATTCCTAGAAAAGGATCTTGGATTAATTTCTTACAGGCCCTATCAAAAAGCACAGTCCCTCCTAGTAGCATTTATTTTACTTTTAATGTTGGAAAGCCTTTTTCTACTACCAAATATCATGCCTCGGTAAAGAGACAAGGAAAGCATTGTTGGAGTGAAGGCTCTTCTCCGTATTGGGTTGGCCGATGATAAGGTGGGGGTCAGGAGGCAAGTCAGAGATGAGCAGGAAGCAGTCCCCCCCAGATAGTGCCTTTGGTCTCGGTATGGCTGTTTGACCCAATTTCAGCAAGAAACATTAAGGACAGGACTGTATGGAAAATTAAGAGTAGTCATGAGGAAGCAAGGTCACACGTGGGTACTTCTTTGGTGTCACTGCTGGAGCCCTTCTATGATATCAGTTTCTTCGAAGGCACAACCATGGCATGATCTACTACATATGTTTGTACCTGATGGCAGTCATCAAAATGCCAGCGCAAGTACACAAGGCAATTCGGAGCCAAAACTGAGTGGGGATGGCTGTGTTATTTACGTGCACTAAACACAGAAATGAGAACAAGGAGTTCTAATCTCCAATCTATTGCTGACTTACTTATTGGGAACAGTCACTTACACATTTTATGGGTCAGTTTTCCTTGACACATAAAGGTATTTCAAAGGTTACTAGTAAACAACCCCAGCACACTTTCCAAACAGTCAAAGCTGTATGACTTTCCCCCCTTAGAGGATGGAGCATGGGCCAACTCCACATTCTTCACTACCTAGCACCTTGCCATCATGGAAGGTATACGTAAATACGTTTGTTGTTGATGAACCTGAGTTCTGGGTCATTCTTAGCTTTAGAAGTTTCCTGCAATAAAGAAAAATTAGGAAAGCCAGTTGCCAAGTTCTAATATTATATGCTCAGTACATAAGGCACTTTGATTTAACTTTAGCTTCTTCTTCCTAGAGCCCCCACTGGTCAGAGTAAATCGCAAAGAAACTTTTCCAGGGGTTACAGCTCTCTTCTGCAAAGCTCATGGCTTTTACCCCCCAGAAATTTACATGACATGGATGAAAAACGGGGAAGAAATTGTCCAAGAAATTGATTATGGAGACATTCTTCCCAGTGGGGATGGAACCTATCAGGCGTGGGCATCAATTGAGCTTGATCCTCAGAGCAGCAACCTTTACTCCTGTCATGTGGAGCACTGCGGTGTCCACATGGTTCTTCAGGTCCCCCAGGGTAAGGACGGGGATCGTGGCTGTCTAGGGAGAGAGCCTGGAGAAAGGGGTGAGCAGGAAACCATGCTCGCTGCCAGGGAGGGGAGGATAGATCACTGCCTCACTCAGTGTGCCTTAGAATGGGTCTTTTAAATAAGTGGTTCTCACACTTTTTGGAACCAGGACGCCTTCATACTATTAAAAAATTATTGAGGACCCCAGAGAGCTTTTGCTGATGTGGGTTATATCTATTGCTATTTACTACATTACAAATTAAAAATTTAAAAATTAAACACGAATGGGTGCAGTGGCTCATGCCTGTAATCCCAGCACTTTGGGAGGCTGAGGCAGGTGGATCACTTGAGGTCAGGAGTTCGAGACCAGCCTGGCCAACATGGTGAAACCCCATCTCTACTAAAAATACAAAAATTAGCCAGGCATGGTGGCGCATGCCTGTAATCCCAGCTCCTGGAGGCTGAGGCAGGAGAATCGCTTGAACCTGGGAGGTGGAGGTTGCAGTGAGCCGAGATCGCACCACTACACTCCAGCCTGTGCGAAGGGAGCAAGACTCCCTCTCAAAAAAACAAAAAAACAAAAAACAAAAAAACACAACCCAGGCGCAGTGGCTCACTCCTGTAATGCCAGTACTTTGGGAGGCTGACGCGAGTGAACTGCTTGAGCCCAGGAGTTCAAGACCAGCCTGGGCAACATACTGAGATCTCATCTCTACAAAAAACACAACAATTAGCTGGGCATGATGGCATGCGCCTGTAGTCCCAGCTACTGAGGAGGCTAAGGTGGGAGGATCGCTTGAGCCCAGGAGGTTGAGGCTGCAGTGAGCTATAATGGCACCACTGCACTTCCACCTGGACGACAGAGTGAGACGCTGTCTCAAAAAAAAAAAAAAAATTAAACACAAGAAAACACAAGCAGATATTCCATTAGTGGTCAGATTGATGAGTGAGAAGCAACAGTAAGGAAAATGGTGTTGGGTTTCCTGATGATCACAGGGACAAAAGTCCCAGAAAGTTAACACAGAAGGGAAAGGGGACTTGTGGATTTTTTCTCATTTGCTTGCTTTCAGAATCAGAAACTATCCCTCTTGTGATGAAAGCTGTCTCTGGGTCCATTGTCCTTGTCATTGTGCTGGCTGGAGTTGGTGTTCTAGTCTGGAGAAGAAGGCCCCGAGGTGAGAGGCACATGGAAGGGATCCAGGGGGCTGCAGACTCTCCTGCATCTCTCCAGTTTTATTTTCTGCACCTGCTGCTCCCTCCTCCATTCAGAAATGGCTTGGCTCTCAGGCTGGGATCACAGAAGGACCTGGGACAACCCTCCCACCATGTAGGGGACACAAAGCATGGATAAAGCTTACAGGGAGAGTGGTCTCTTTTCATAGGTGATGCCTGACATCAACAAACTAGTACATCTGTCCAGGGGAACTGTCCCCCTAGAAGTTGGGTCAGAGAAGATATGGGGATCTTGATTTGTCTTTTTCCAAACCATCTTTTTATTATTAATTACTATTGACTTCTGGGGCAGTGTCCTTTGTTTCAAGACTTCAGTCAGTTTTCCCATTTTGACCACCATTCTTTCATCCCAAGCATATGAAAGTCCTTTTCCTTGTAAATTCATTATTCAAAACATTAAATATGTAAGAGTAGATACCTTCAGGGAATGGGACTTAGAGTAAGGAAAAGGGGAGGAGAAGTAGGAGATATATAGGCTCTTGATAATGTGGAATAACATAAATTCATTCAGTAAGTATACATTAATGACCTACTGTGCTCCAGGCACTGTACTGGTTGCTGGGATATAACAATGAACAAGACAGATACGATCCCTGTTTTCATAGAGCTTACAATAGAGCCTGGTAAGGTTATCTCCTGGCTCTGGCTTCACTAATTGCTCAAATTGATCACAGGATAGTACCGATGAGACCATGCTTTGAACCCAAAGTGGACCAGAAGTTTGGTTTTCCTTCATAGACATAGACCTCAACTCCAATTCAGGTGATAACTGTACAAAAGCATGTTGTTAGATCAAAGTAAAACCAACCCTTTTACTAGAAAATCAGCTCAGAGGCCGGGCGTGGTGGCTTACAACTTGTAATCCCAGCACTTTGAGAGGCCGAGGCAGGCGGATCACTTGAGGTCAGGAGTTCGAGATCAGCCTGGCCAACATGGTGAAACCCTGCCTCTACTGAAAATATTAAAAAAAAAAAAATTAGCTGGGCGTGGTGGCACATGCCTGTAATCTCAGCTACTCAGGAGGCTGAGACAGGAGAATCGCTTGAACCTGGGAGGCGGAGGTTGCCGTGAGCAAAGATCGCTCCATTGCACTCCAGCCTGGGCAGCAAGAGCGAGACTCTGTCTCAAAAAAGAAAAAAGAAAAGAAAAGAAAAGAAAATCAGCTCAGAGAGTTAATGGGTTGTTAATGTTTTCTTTATAGATAAAGTACAGCACTAATCCTAATCCAATAAATGATAGTGAAACAAACAAAAAATTTTTTTACAATGACATCCCTCTCTCAATAATTATACAGACTGTGAGTTCCTGCTTTTTATCTTATAGAGTTTACAAATTTGAGCTAAAGTTTGTCAAGTACTAAGAGAATCTTGACAAAGCAAGCTAAAACTGTCGATGCCTGTTTCTCAGATTTTGCTGAACACTGCATACTTTATTTTTGAGCTGTGAGGAAACATTCTTGTAATCTGACTAAAAACCCCTTTCCTTTCAG
Seq C2 exon
AGCAAAATGGAGCCATCTACCTTCCAACACCAGATCGATGATTGCAGATCCCTCTTTTCCAGTTCTCCTTCCTCTAGGAGCCATGTTATCCTCTGTCCCCCATAGAGTCAAGCCTAGTGCTTGAAGGTCCTGACGACACCCACAACATACATGAGAGTAATGGGATTGAGCATTTATGGCAGCAACAGAGGAGCCACAAAATGTTCTTTGTTCTTTGGCTCCAAAAAGACTGTCAGCTTTCAGTCTCTTTTGATGGACTGTTTTATCAGAGTTGACTTTAAATACAGCTTGTCTCATGACACAACGCTTCCCTACATTCTATTTGTCAATGATGATTTGCAACTAGTTGGAGATTCTCAGAGCAGGAAGGAATCTTTTCAACCAGAGCAGGAACTGTCTTCTGCAATGCCTTGGACTTGAGCCTCCAGCCTCCACTTGAACACCATGTGAAGGGAACCTCAGTACTTCATAAAATGGCCTTTCTCATTCATCTTTCATGGGAACATTTATTGTACAAGCGCTTTGAATATCATGGGCACCATGACTGTGACCCTACAGGTAGGATTGGATCACTCCATGAGAGTAGCCGGCAGGTTTCTACAATGGCCTGGGAATGGACTGATTATTTTTATACATTTTCTGGCCTGAGAGAAAGCCAAAGTCCCCTGCTGTTCACAGCAACCCTGCCTGGGAGCTTGGAATCTTGGTAATCTGCCCGGTTGGATCTATGGAGGTAGTCTCACCCTTTTTGTCTTTTGTGGGAAATTAAGAGAAATAATTATCAGACATATCATCACCTCCAGTGGAACTACAGAGACCTGGACCCAGCTGCACTATTTTAATGTAAAAATAACAGTATGGCCAGGTGCAGTGGCTCACGCCTGTAATCCCATCACTTTGAGCAGCCAAGGCGGGCGGATCACGAGGTCAGGAGATTAAGACCATCCTGGCCAATATGGTGAAACCCTGTCTCTACTAAAATACAAAAAATTAGCTGGGCATGGTGTTGCGTGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGACAGGGGAATTGCTTGAACCCGGGAGGCAGAGATTGCAGTGAGCCGAGATCACGCCACTGCACTCCAGCCTGGCGACAGAGTGAGACTCTATCTCAAAATAATAATAATAATAATAATAATAATAATAATAATAATAACAGTATATTTGGTGTCAGGAGAGGGCTCAATTCTCATTTCTGCCTTTCCTGTGCTGGCTCATGGTAGCTGGGCATGACTTGCCTTCCTACATAGGTTGTCTTCATACATATGCACTGGGAATCAATAAAAGCCCATGGTGAGAATGAACATCCCCTTAATGTTCCTTACTATCCCCAACCCCTGAGGCCTCACCTACTGCCCTGCCATGTGGAGCTACTTGCCCTGGGGCTGCCAGTCACACATTCCTCGGTCCTACTTCTCTGACCCCGTTTGACTCTGCACCTGAGCCCTAATGCTTACTTCAGTGACCTGAACTTTGACAAGTGGCTTTTGTCCTGCACCTCAGGTTTGACCTCTGCTCTCCCTTGACCTTGACTGTGACATTTGACCTTTGGCTTTAATCATTACAGCCTCAGATAAAGGTACCTTCAGCCCGGGCACAGTGGCTCACGCCTGTAATCCTAGCACTTTGGGAGGCTGAGGCAGGCGGATTCCCTGAGCTCAGGAGTTCAAGACCAGCCTGGGCAACACGGTGAAACCCTGTCTCTACTAAAATACAAATAATTAGCTGGGCATGGTGGCATGTGCCTATAGTCCCAGCTACTTGGGAGGCTAAGGCAGGAGAATCACTTGAATCTATAAGGCAGAGGTGGCAGTGAGCCGAGATCACACCACTGCACTCCAGCCTGGGCAACGGAGCAAGACTCTGTCTCCAAAAAAAAAAAGAAAGATACCCTCAGTGTGCCAGGCCTCTAAGAGCTCACCTGCCAGGCTTCCTCCTTGCTCCACTGTCCCATGTAATTCCATATATGAAGCTACCACTGTACATCTCTCTTTTCCGGTGCCTGTTGAGTTGCATAGAAGCACAGTTGTGTTTATTTTGTTTTTAGGGTTGCCATGGGCAATTTCCGTGCCACTTTTAAGCAGTGTTGCACTGTGAAGAGAATGTAGGCAAGTTTATTTCTGGAATGGTTTCTTCTTACAATCAGAATAGTTAGGATGTAATATATTTTTGGGTGGGCATTTAAAGTGAAAAGGTACATATTTACATAGACACAGGTGATAATGTATCTATGTAAATGCCTTTTGATTCTGCAACTGCAGGATACTCTCATCAAAGACACAGATAAAAAGCCTCTGTGTTTCCAAGGCCTTGCCCTACACCTAACACATAATATGTCCAAATGGATGAAGAGGAGGCAAGGACAAGGATGTGATGACAAAACATTCTGTTATGCACTTGTAGCATTTATGTTTCTTCCTGGGGGATTTTATAATACTAAAAGAATCATAATATAAAGAGATGATTAAAAAAAAAATACTGCCGGGCACGGTGGCTCATGCCTGTAATCCCAGCATTTTGGGAGGCCGAGGTGGGCAGATCACCTGAGGTCGGGAGTTCGAGACCAGCCTGACCAACATGGAGAAACCCTGTCTCTACCAAACATACAAAATTAGCCGGGGATGGTGGCGCATGCCTATAATCCCAGCTACTCGGGAGTCTGAGGCAGAAGAACCGCTTGAACCCGGGAGGCAGAGGTTGTGGTGAGCCGAGATCGCGCCATCGCACTCTAGCCTGGGCAACAAGAGTGAAACTCCATCTCAAAAAAATAAAAATAAAATAAGTAAGTAATACCTAAAATTCTGCAACCTTCATTTTACTATAGATGGTTGAAGATTATATTACTTCTTAATTGTTTTAGCCTTGTTATTGCTTCATTACTTCATGGTTGTTGAGTACAGATGCTCAGTAATCATAACCTATGAAATATTTGACACCATGATCTAAACATTAAAAACAAATAACTGTGCTATTGCCACAGCTATGTTTTGGCTTTGAATTTTCTTTACTGAATATTTTGGATCAAGAACACTAGATGAGAAACCTGTTCAACTCTGTTCTTTTTTTTTTTTTTAACTCCACTGTATTTATTACCTGTTTTTGTTTTTTTTGTTTGTTTGTTTTTGATGTGCATATAGACCAAGATGTGGTAAATTTAAATGGCAGATGTTTTTGATGTGGTACATTTAAGGGAGAGAAAGCAGTTTAAAGAGCAGGGTGAAAAATCCAACAAGACTCCATCGAGAGTTTCTGAGCTCTCCCATCAGGGGCCAGTCCTCCTTTCCTCTCTCCTCTTACTCCCATGATTTCCAAGTTGTGATCCTTTCCTTATTTCTGAGGAATGACTTGGTTTCTCCTCTTCTTTTTTTGGCCTGAGAGAAGATGTTTTTGCACTTGTAGCTATGAGGAACAGATTGTCCACTAGGGAGGCCAGCTGATCATTTTCTGCCAGAGTCACACAGAGCAGTCACACCTTATTTTGAAAACCACTGTCTGGGGTCTTTGTCCTCACATATGCAGGTCTAGTGTCCCCACAAAGTGATCAGATGGATATATAAAGTGGAGTGCCAATGTATTAATTTACTGTGAGAAACACAATTGCTAAGTGGGTCAGATATCTGTCTCAGCTGGTCAGTACACCTTCCAGCAGGAAAATCTACATAAGAACAACTAAATCACAATCTGTAGAGTGCTTGATGACCCCAGAATTGGTGCAAGGGGACACATTCTTGCTTGTTAGCACCTGCTCTCTGGAGTTTGCTATTTTCTCACACACAGTGTATTAGTTCACAGAATGTTCTCCAAGGAGGACAGGGGGCTTTGCCCATAGCCATGTGCTGTGGGCAGCAGAGCTAGGAAGAAGCACAGGCATCTCCCAGCCCAGGTGTTTCCCACTTAACTGCATTGCCCTTTTCATCTTTTTTTTTTCCCCAATAGCTTCAGGACATTCAGTACATTGTGCTTTTTAGAGGTTGATGATTCCACTGCCTGAGCTGCCTTCACCTCTCTTTCTTTGGAAATTGCCATCTTTGAGCATTGTATGTCTCTGTAACATCTCTGCATCTCCTTTTCACTCTGGCCTCCCTTTCTCCATTGTCCTTCTAGCTTCTGGTTGCCCCAAACCCCACAGACTGTGTAACAAAACCCAAAACCTATTGGTTTAAAACAATACCCATTTTATTTTCTTTCATAGTTTCTATGGGTCAGGAATTTGGATATGGCTTGGGTAAGCAGTTCTGGCTTCTCATGGAGTTGGAGGCAAGTGGTGGCTGGAACAGAAATGGGGCAGCCAGGGGTGGTGGCCAGGCATCAGCTACATCTCCTCCATGTAGTCTCAGGAACTCTCCATGTAATCTCTCTGTGTGGGTTGGGCTTCCTCACAACATGGTGGCCTCAGGGCAGTCACTGCTTACATGGCAGCTAGCTTCCCTCAGAGTGAGTATCCCAAGAGATCACAGTCAAAGTGCATAGCATTTATATAATCTAATCTTGGAAGTCACAAAATGTCATTCTTGTGATACTCTCATTGGTGAAGAAGTCATAAAATCCTGCTCAGGTTCAAAAAGAGGGTGTATAGAACCCAACACTCAATAGGAAGATTGTCAGAGTTACATTGTAAGAAGAGCATGTAGTTGGGAGATATCATTGTGGCCATTTTGGGAAAGATGCAACATGTCACAATGTCATGTTCTCCATCGTCTCCCCGTTCCACCTTGTACTGGTTTCCAAGGGTAGTCGTTTAAAAGTACCACAAAAACTGGGTGGCTTGGAACAACAGAAATTTATTGTTTCACAGTTCTGGAGGCCAGAAGTTCAAAATGAAGTGTTGGCAGAAACATGCTGCCTCTAAAGGGACTGGGAAAGGATCTGTTCCAGGCTTCCCTCCTATCTTCTGGTTGTTCCTTGCCTTCTGGCTGCGTAACTCTAGTCTTCATTTGGTGTTCTCCCTGCATGCATGGCTTTGTGTCCAAATTTCCTTTTTTCATGAGGCCATCAGTCATACTGGATTAGGGACCCACTCTACTACTGCAGGATGACCTCACCTTCCCAAATTACATCTGCAACAACCCTATTTCCAAAGAAGGCCACATTCTGAGGTACTGGGGGTTATAACTTCAACATGAATTTTTTGGAGGAAACAATTCAACTCCTAACACATCTCTACCCAACCTCTGTAGGTTCCCTCAATCCACCAAAATTTTTTGGCTCCACTGGATTATCTAGCAGTTAGGAAACCAAGATCATTAAATGAATTCACCGCAACTACAGTGAGACTGACTACCTTAGCTTACCTCTGTGAAAGGAGTTAAGCCAAAGGAATCTGTGGAATTTTGGAGAGTTTGGGAGCATTTGGGGGCAGGAGGCAAATGTTCTTCCTTTAAATCACAACACTTAGTTCTCTTCCATTTATAAGACTCACCCCTCCATCCCAACCCCTGCACCACAGGACAAGGAAGTGTTCTTGGTCTTCAACTTTCATCCCTGATGGTGAAAGCAGTTGCTCCTGACCTATTTGCCCACCAGCTTCTCCTCTGGAGCCTGAGGCTTCTGATGCCTGCCTGGCTGGTTCTCAGTAAGAAGGTCAAGTTCAACCAGAGGGGAGATGCTGATGCCTTTCAGTACTTAAATATGAGTTCAGACCCTGGGGCCTGGACATAAGATTTGGGGTCCCCTGGATATAAGATTTCTGAAAACACTCAGACTGTGGAGACCCCTGCTGAGGGAGAAGCCCCAAACTGTGGCTTCAGGGGAATGCACCAAGGCTCTCATTGAGGCCACCTTCTCCAACAAGCTCCCCTCCTGCTTCCCCATGGCTGGCATGGCTGAGGAAAAAGGACACTGAGCACAGCCCGTGCATGAGCGGCTTGCCATGCAACAGGATAAAACCCATAATGCCACTCAGCAAGCCTTGGTTGTAAATCTAGTTTGATTACATTTGTAATCAAATGATGGCCATTTGTTCTGTTTCTGGTTTGTGAACCAACTGAAGACATAAGCAGGGCCTCAGCTAACCCACAAATAGCACATGTGTGCAAACTGGAAAAATGAACCCTTCTTCTGGGAGGACGCCAGCCCAGGCCAGGTCACCCGGCTTGGCCAGCAGAACACAGAGTAGATTTTGGTCCCGTTTGTTCCCCAGTGGGGTATCTATCCTTGTGCAGGGCACAAGCCTACATGGTGGCTCTGGTCATATCATTAGAAAATAGACAGAAATGGGCTGCACACCAGAATGAATGAATTGAATTGAAAGGGAGGAGTGATGGTGGAAAAAAAAACAAGTCAATTCATTTAGACTGGTAGAACCAGAACCACTGTGTAGTACATCCAAACGGTTAAAATTCCCTGGAAGATGTTACATAATCCTATCATGGTGTTTATTTATGGAAATCTATTTTAAAAATTTTATGTAATACTGCACAGTCTGTTTGCATGATGCCTTGTACGTAGTAGCAACTCAGTAAATACTTTTTGAATGAACTAGTATAGTATTTTAATTAGCTAGTCTTCATGTACTGGTACAAAAGAACAGTGTCATCTTACAGCTGAAGTCATAGAGGGGAAATATCCCACTCAAGATCATATAACATTCCAGGTACTCAGGATGAATGGTTTGAGGACTGGTCTGAATTCTTCAAAGGTTTCAGCTGTATTAACATTCTCCATCTAATAAACTTTATCTTGTCATTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153029-MR1:NM_001195035:4
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.001 A=NA C2=0.205
Domain overlap (PFAM):
C1:
PF0012913=MHC_I=PD(50.0=94.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)