HsaINT0105173 @ hg38
Intron Retention
Gene
ENSG00000182154 | MRPL41
Description
mitochondrial ribosomal protein L41 [Source:HGNC Symbol;Acc:HGNC:14492]
Coordinates
chr9:137551199-137552555:+
Coord C1 exon
chr9:137551199-137551978
Coord A exon
chr9:137551979-137552073
Coord C2 exon
chr9:137552074-137552555
Length
95 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CCCGCTCTCTCCTCCCGCAGGGC
3' ss Score
13.83
Exon sequences
Seq C1 exon
GGGCGACTTCCGCGTGGGGTGAGAGGTCGCCTGCGAGGGTGACCGGGCAGGAGGGCTCAGTGCGCAAGCCGGACGTGCTGGGTCCAAGATTATTGATTAATTTGGGCACCGCGAGGGCTCGAGTCCCCCCACACCACTGCCCGGCCTGCGGGGGAGCACAGACAGCCCGGGCCCTCCCGGCTGCAGGTCCCGGGCTTTCCCCGCGCGGTTGCCGGCTCCGCCCAGAGGAGCCGCGCCCGGCGGAGGGGTAAGAAAGGCAGGGTCGCGGCGTCAACGCGGCGGCCGTCTCGAGTCCAGGGCCCGCGTCCTCCCCGACCTCCCGACGCCACCTCACGGCCTCAGGGGGACTGGGCTCCCGGGAAACCGCCGGCCACCTGGCGGACGAACACAGGCAGTGGCGGGCAGTGGAGACGCCAGGGACCACCGCGCTGAGAGCGATCACTCATCCGCCAGCCCCGCCCCGCGAGCCCCGCCCCGCGAGCCCCGCCCCGCGAGCCCCGCCCCGCGAGCCCCGCCCCGCGAGCCCCGCCCCGCGAGCCCCGCACCGCCGGCCCCGCACCGCCAGCCCCGCGAGCCCCGCCCCGCCCCGCGCGCTCCTCGCATTGGCCGAGTCCCCGCGGCCACACCCCCTACCAGATTGGGGCCGCTATTGGACGCGGCGGCCGCGGCCAATCGGAGCCGCTCTTGCTGCGACGCAGCGGTCGGAAGCGGAGCAAGGTCGAGGCCGGGTTGGCGCCGGAGCCGGGGCCGCTTGGAGCTCGTGTGGGGTCTCCGGTCCAG
Seq A exon
GTGAGTCTGTCGGATTGGGGCGGGCGCCGCGCGCGGCCAGGGGCGGGGCTGGCCGGGTTCCCGGGGCCGCGACTACCCGCTCTCTCCTCCCGCAG
Seq C2 exon
GGCGCGGCATGGGCGTCCTGGCCGCAGCGGCGCGCTGCCTGGTCCGGGGTGCGGACCGAATGAGCAAGTGGACGAGCAAGCGGGGCCCGCGCAGCTTCAGGGGCCGCAAGGGCCGGGGCGCCAAGGGCATCGGCTTCCTCACCTCGGGCTGGAGGTTCGTGCAGATCAAGGAGATGGTCCCGGAGTTCGTCGTCCCGGATCTGACCGGCTTCAAGCTCAAGCCCTACGTGAGCTACCTCGCCCCTGAGAGCGAGGAGACGCCCCTGACGGCCGCGCAGCTCTTCAGCGAAGCCGTGGCGCCTGCCATCGAAAAGGACTTCAAGGACGGTACCTTCGACCCTGACAACCTGGAAAAGTACGGCTTCGAGCCCACACAGGAGGGAAAGCTCTTCCAGCTCTACCCCAGGAACTTCCTGCGCTAGCTGGGCGGGGGAGGGGCGGCCTGCCCTCATCTCATTTCTATTAAACGCCTTTGCCAGCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182154:ENST00000371443:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF098094=MRP-L27=WD(100=83.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCGGAGCCGCTCTTGCT
R:
GTCCACTTGCTCATTCGGTCC
Band lengths:
183-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development