HsaINT0105173 @ hg19
Intron Retention
Gene
ENSG00000182154 | MRPL41
Description
mitochondrial ribosomal protein L41 [Source:HGNC Symbol;Acc:14492]
Coordinates
chr9:140446309-140447007:+
Coord C1 exon
chr9:140446309-140446430
Coord A exon
chr9:140446431-140446525
Coord C2 exon
chr9:140446526-140447007
Length
95 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
CCCGCTCTCTCCTCCCGCAGGGC
3' ss Score
13.83
Exon sequences
Seq C1 exon
GCGGCCGCGGCCAATCGGAGCCGCTCTTGCTGCGACGCAGCGGTCGGAAGCGGAGCAAGGTCGAGGCCGGGTTGGCGCCGGAGCCGGGGCCGCTTGGAGCTCGTGTGGGGTCTCCGGTCCAG
Seq A exon
GTGAGTCTGTCGGATTGGGGCGGGCGCCGCGCGCGGCCAGGGGCGGGGCTGGCCGGGTTCCCGGGGCCGCGACTACCCGCTCTCTCCTCCCGCAG
Seq C2 exon
GGCGCGGCATGGGCGTCCTGGCCGCAGCGGCGCGCTGCCTGGTCCGGGGTGCGGACCGAATGAGCAAGTGGACGAGCAAGCGGGGCCCGCGCAGCTTCAGGGGCCGCAAGGGCCGGGGCGCCAAGGGCATCGGCTTCCTCACCTCGGGCTGGAGGTTCGTGCAGATCAAGGAGATGGTCCCGGAGTTCGTCGTCCCGGATCTGACCGGCTTCAAGCTCAAGCCCTACGTGAGCTACCTCGCCCCTGAGAGCGAGGAGACGCCCCTGACGGCCGCGCAGCTCTTCAGCGAAGCCGTGGCGCCTGCCATCGAAAAGGACTTCAAGGACGGTACCTTCGACCCTGACAACCTGGAAAAGTACGGCTTCGAGCCCACACAGGAGGGAAAGCTCTTCCAGCTCTACCCCAGGAACTTCCTGCGCTAGCTGGGCGGGGGAGGGGCGGCCTGCCCTCATCTCATTTCTATTAAACGCCTTTGCCAGCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182154-MRPL41:NM_032477:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF098094=MRP-L27=WD(100=83.3)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATCGGAGCCGCTCTTGCT
R:
GTCCACTTGCTCATTCGGTCC
Band lengths:
183-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)