RnoINT0094382 @ rn6
Intron Retention
Gene
ENSRNOG00000029875 | Mrpl41
Description
mitochondrial ribosomal protein L41 [Source:RGD Symbol;Acc:1310241]
Coordinates
chr3:2181045-2181962:-
Coord C1 exon
chr3:2181816-2181962
Coord A exon
chr3:2181603-2181815
Coord C2 exon
chr3:2181045-2181602
Length
213 bp
Sequences
Splice sites
5' ss Seq
CAGGTCGGT
5' ss Score
7.53
3' ss Seq
TAGCTGCCTTGTTCTTTCAGAGC
3' ss Score
9.03
Exon sequences
Seq C1 exon
GTCGGAATCGCTGTGGGGACCTTGCTGTGTCTGTGAAGGAGCGGACAGGCGGTGTTTTAAACGGCTAAGGCTGCGGAAACCGTGTCTGACCTCAAGTCGGAAAGGGAGAAGAGTCTTGAGGGCCGAACTCTAGAGCCACCAGCCCAG
Seq A exon
GTCGGTTTCCAGTTGGCGCCGCCTGCACGGGGTCCGGGATCTTTCGCGGTCAGGGGTAGTCTCCTTTAAGAGGGATCTTGGGTCCTCTCTGCCTGTGGCTTCTCGGATCATTGGCTCCCACAGGACCCACGGCCATCCTTGCTCCTGGGCTCTCGGGTTCTGGGTAAGTTCCTCTGGCTCTGATTGACTCCCTTAGCTGCCTTGTTCTTTCAG
Seq C2 exon
AGCTGATTTATCCGGAACCCAGCATGGGTTTCCTGACTGCCGTGACTCAAGGCCTGGTGCGGGGAGCGGACAGGATGAGCAAGTGGACAAGCAAGCGGGGACCACGCACCTTCACTAAGAGTCGGGGTGCCAAGAAAACAGGCTTCTATACAAACAGGAAGTTTGTGCAAATAAAAGAAATGGTTCCAGAATTTGTGGTCCCGGACTTGACCGGCTTCAAGCTCAAGCCCTACGTTAATTACCGAGCTCCTGCAGGCATAGACACACCTCTGACCGCCAAAGCGCTCTTCCTGGAAACAGTTGCACCCGCTATCGAAAAAGACTTTAAAGAAGGGACTTTTGATGCTAACAACCTGGAGAAATATGGCTTTGAGCCCACACAGGAAGGCAAACTGTTCCAATTGTATCCCAAGAATTTCCCACGCTAGAAGACCGTGACAGTGGCTAAGGTTTGTCTACAAAGTGGAAACAATACTGACCATGCCTTGGATTCTGAGTGTCTCAAAGAGTAGGGGCAGCTTCCTTGTGCACTTCTATTAAATGCCTTTAGTATCTTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029875:ENSRNOT00000044802:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF098094=MRP-L27=WD(100=83.0)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGTCTTGAGGGCCGAACT
R:
GTGTGTCTATGCCTGCAGGAG
Band lengths:
306-519
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]