MmuINT0100826 @ mm10
Intron Retention
Gene
ENSMUSG00000036850 | Mrpl41
Description
mitochondrial ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1333816]
Coordinates
chr2:24974117-24975098:-
Coord C1 exon
chr2:24974888-24975098
Coord A exon
chr2:24974682-24974887
Coord C2 exon
chr2:24974117-24974681
Length
206 bp
Sequences
Splice sites
5' ss Seq
CAGGTCGGT
5' ss Score
7.53
3' ss Seq
TGCCTTCCTTGTTCTTTCAGAGC
3' ss Score
12
Exon sequences
Seq C1 exon
TGGTGACCAGTCGGCGAGGCTCTTGCTACGGAGTGTCTGACCCCGCCTACGGTCGGAAACGCAGGGAGGACCTTGCTGTGCCTTGGAAGGAGTGACCGGTCAGGCGGTGTTTTAAACGGCTCAGGCTGGGGAAACCGTGTCTGAGCTGTCTCAGGTCGAAAGGGTTCTCCCTTTCTCCCTTGCGGGCCGAGCTCTAGAGCCGTCAGCCCAG
Seq A exon
GTCGGTATGAGCGTTTCCAGTTGGCGCCACCTGCACGGGCTTCTTCGGGGTCCGGGATCTTTCCGGGCCGGTCCTCTGCGCCCGTGGCTTCTCGTATCTTCGGCTCCCACAGGCACCACAGCCATCTTTGCTCTTGGGCTCTCCGGTTCTGGGTAAGTTCCTCTGGCTCTGATTGATTCCCTCAGCTGCCTTCCTTGTTCTTTCAG
Seq C2 exon
AGCTGATTTATCCAGAGCCCAGCATGGGTTTCCTGACTGCCGTGACTCAAGGCCTGGTGCGGGGAGCTGACAGGATGAGCAAGTGGACAAGCAAGCGGGGACCACGCACCTTCACTAAGAGTCGGGGTGCCAAGAAAACAGGCATCTATACTTCTGATAGGAAGTTTGTGCAAATAAAAGAAATGGTTCCAGAATTTGTCGTCCCGGACTTGACGGGCTTCAAGCTCAAGCCCTACGTTAATTACCGAGCTCCTGCAGGCATAGACACACCTCTGACCGCCAAAGCGCTCTTCCAGGAAACAGTTGCACCCGCTATCGAAAAAGACTTTAAAGAAGGGACATTTGATGCTAACAACCTGGAGAAATACGGCTTCGAGCCCACACAGGAAGGCAAGCTGTTCCAATTATATCCTAAGAATTTCCCACGCTAGAAGACCATGAGAGAGGCCAAAAGTTTGTCTACAAAGTGGAGACAGTACTGACCAAGCCTTGGATTCTTATTGTCTCAAAGAGTAGGGGCAGCTTCCTAGCGCACTTCTATTAAATGCCTTTAGTGTCTCGTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036850:ENSMUST00000045604:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.306
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF098094=MRP-L27=WD(100=83.1)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTGTCTCAGGTCGAAAGG
R:
CTTGAGCTTGAAGCCCGTCAA
Band lengths:
299-505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types