HsaINT0105704 @ hg19
Intron Retention
Gene
ENSG00000173531 | MST1
Description
macrophage stimulating 1 (hepatocyte growth factor-like) [Source:HGNC Symbol;Acc:7380]
Coordinates
chr3:49724582-49724911:-
Coord C1 exon
chr3:49724797-49724911
Coord A exon
chr3:49724719-49724796
Coord C2 exon
chr3:49724582-49724718
Length
78 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGA
5' ss Score
5.26
3' ss Seq
GTGATGCTCTGGGCCCTCAGGTA
3' ss Score
7.68
Exon sequences
Seq C1 exon
ACTACGTACGGACCTGCATCATGAACAATGGGGTTGGGTACCGGGGCACCATGGCCACGACCGTGGGTGGCCTGCCCTGCCAGGCTTGGAGCCACAAGTTCCCAAATGATCACAA
Seq A exon
GTGAGACAAACACCTTCCCTCCGTCCCGGCCTGGGGCCTTCCCCCAGCACACACTATAGTGATGCTCTGGGCCCTCAG
Seq C2 exon
GTACACGCCCACTCTCCGGAATGGCCTGGAAGAGAACTTCTGCCGTAACCCTGATGGCGACCCCGGAGGTCCTTGGTGCTACACAACAGACCCTGCTGTGCGCTTCCAGAGCTGCGGCATCAAATCCTGCCGGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173531-MST1:NM_020998:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.057 A=NA C2=0.079
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PD(2.5=2.6),PF0005113=Kringle=PU(42.9=84.6)
A:
NA
C2:
PF0005113=Kringle=PD(55.8=91.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACGTACGGACCTGCATCA
R:
CCATCAGGGTTACGGCAGAAG
Band lengths:
172-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)