BtaINT0095646 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011585 | MST1
Description
macrophage stimulating 1 [Source:HGNC Symbol;Acc:HGNC:7380]
Coordinates
chr22:51082124-51082457:+
Coord C1 exon
chr22:51082124-51082238
Coord A exon
chr22:51082239-51082320
Coord C2 exon
chr22:51082321-51082457
Length
82 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGA
5' ss Score
5.26
3' ss Seq
CTGTATTGCTGCTCTCACAGGTT
3' ss Score
7.61
Exon sequences
Seq C1 exon
ACTATGTTCGCACCTGCATCGTGGACAACGGGGTCGAGTACCGGGGCACTGTGGCCATCACCGTGGGTGGCTTACCCTGCCAGCGCTGGAGCCACAGGTTTCCCAATGACCACAA
Seq A exon
GTGAGAGACAGCAGCTTCCCTCTGCTTCTGCCCGCCTGGCGCGCCCCTCCCCACAGCTCGCACTGTATTGCTGCTCTCACAG
Seq C2 exon
GTTCACACCCACACTCCGGAACGGCTTGGAGGAGAACTTCTGCCGCAACCCGGACAGGGACCCGGGAGGTCCCTGGTGCTATACAACCGACCCTGCCGTGCGCTTCCAGAGCTGCGGCATAAAGTCCTGCCGAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011585:ENSBTAT00000030663:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.043
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PD(1.2=2.6),PF0005113=Kringle=PU(42.9=84.6)
A:
NA
C2:
PF0005113=Kringle=PD(55.8=91.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGCCACAGGTTTCCCAA
R:
CCTCTCGGCAGGACTTTATGC
Band lengths:
167-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]