HsaINT1023636 @ hg38
Intron Retention
Gene
ENSG00000173531 | MST1
Description
macrophage stimulating 1 [Source:HGNC Symbol;Acc:HGNC:7380]
Coordinates
chr3:49687149-49687478:-
Coord C1 exon
chr3:49687364-49687478
Coord A exon
chr3:49687286-49687363
Coord C2 exon
chr3:49687149-49687285
Length
78 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGA
5' ss Score
5.26
3' ss Seq
GTGATGCTCTGGGCCCTCAGGTA
3' ss Score
7.68
Exon sequences
Seq C1 exon
ACTACGTACGGACCTGCATCATGAACAATGGGGTTGGGTACCGGGGCACCATGGCCACGACCGTGGGTGGCCTGCCCTGCCAGGCTTGGAGCCACAAGTTCCCAAATGATCACAA
Seq A exon
GTGAGACAAACACCTTCCCTCCGTCCCGGCCTGGGGCCTTCCCCCAGCACACACTATAGTGATGCTCTGGGCCCTCAG
Seq C2 exon
GTACACGCCCACTCTCCGGAATGGCCTGGAAGAGAACTTCTGCCGTAACCCTGATGGCGACCCCGGAGGTCCTTGGTGCTACACAACAGACCCTGCTGTGCGCTTCCAGAGCTGCGGCATCAAATCCTGCCGGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000173531:ENST00000449682:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.085
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PD(1.1=2.6),PF0005113=Kringle=PU(42.9=84.6)
A:
NA
C2:
PF0005113=Kringle=PD(55.8=91.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACGTACGGACCTGCATCA
R:
CCATCAGGGTTACGGCAGAAG
Band lengths:
172-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains