RnoINT0094904 @ rn6
Intron Retention
Gene
ENSRNOG00000019680 | Mst1
Description
macrophage stimulating 1 [Source:RGD Symbol;Acc:3114]
Coordinates
chr8:116858825-116859155:+
Coord C1 exon
chr8:116858825-116858939
Coord A exon
chr8:116858940-116859018
Coord C2 exon
chr8:116859019-116859155
Length
79 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGC
5' ss Score
6.39
3' ss Seq
CAGTAAGGCTCTGTCTACAGGTA
3' ss Score
4.96
Exon sequences
Seq C1 exon
ACTATGTACGGACCTGCATTATGGACAATGGGGCCAGCTACCGGGGCACTGTGGCCAGGACAGCTGATGGCTTGCCCTGCCAAGCCTGGAGCCGCAGGTTCCCCAATGACCACAA
Seq A exon
GTGAGCCAGCCGATTAGGTTTAGACCTATAGATGCGGAATCCCCCACCAGCATGCACTGCAGTAAGGCTCTGTCTACAG
Seq C2 exon
GTACACGCCCACACCGAAGAATGGCCTGGAAGAGAACTTCTGTCGGAACCCTGATGGGGACCCCAGAGGTCCCTGGTGCTACACGACAAACCGCAGCGTGCGTTTCCAGAGCTGCGGCATCAAATCATGCAGGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019680:ENSRNOT00000026711:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.128
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=PD(1.1=2.6),PF0005113=Kringle=PU(42.9=84.6)
A:
NA
C2:
PF0005113=Kringle=PD(55.8=91.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGGACAATGGGGCCAGCTA
R:
GTGTAGCACCAGGGACCTCT
Band lengths:
180-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]