HsaINT0105829 @ hg38
Intron Retention
Gene
ENSG00000182979 | MTA1
Description
metastasis associated 1 [Source:HGNC Symbol;Acc:HGNC:7410]
Coordinates
chr14:105465094-105466578:+
Coord C1 exon
chr14:105465094-105465183
Coord A exon
chr14:105465184-105466425
Coord C2 exon
chr14:105466426-105466578
Length
1242 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGC
5' ss Score
7.43
3' ss Seq
GCCTGTGTCATTCCCGGCAGAGA
3' ss Score
9.23
Exon sequences
Seq C1 exon
GCACGGCGCGGCTGCCCGAAGCCTCCCAGAGCCCGCTGGTGCTGAAGCAGGCGGTACGCAAGCCGCTGGAAGCCGTGCTTCGGTATCTTG
Seq A exon
GTGAGCAGCCAGGCGTGCTGGGGGGCTCCCAATGCTGCCTGCAGGCAGCTTCTCACCCAAGCTCATGCACTGGTGCTCCCAGCCTTCTCTAGCTGGGAGCTCCTGGACAGCCCCCCAGGGCCTGGAACTGTCCTTTTGGGGTACTCTGCACCGTGCCAGGCTCAGGCAGACCCACTGGGACCCAGGCTGCTCCCTGCTCCTGGGGTCGTGATGGGGCCCAGTGCGGAGTAGCGGCCGCCCTGTCTTCTGCGGGGCCAGCCTCCTCAAGGCACACCCGGGGGCTTCCCTGCCAGTCTCGCTACCCTGTTCCCTGTGTTCTGATCGTCCCTGGGGCCTGAGGGTCTGGGGTTTAGGTGGTGCACACCCCTGCCTGTAATACCATTAAGGCAGCGTCGTACCTGCTGCCTGCAGGGAGTATACTTCCTGAGCCACGCCCACTCCACAGGGGCAGCACTCAGGCCTCTGCACGCCCTCGGCAGGGGGAGGAGCAGCCTCAGGCGGCAGGGGGTTCCTTTGCCTTTGAGCATCTGAGGACACCCGAGAACCTCAGCCGGCTACCCTGGCCCAGCTGGAAGCAGCTTGGTGGCTGGGCCAGACATTTGTGGTGGCGGTGGGGGGCCTCCTCCATTTGCTGGGCTCGAGTGGGCTTGTGCATCTGCCCTCCCGACACAGGGTGACTGTCCTGAGAAGGACATTCCAGAGTCATGAGCCAAGTGTGCTCTGAGATTCAAGTGGCTTTGGCATTGCTCCCTGTTTGGGGTTGTGGCCCCTGTCCTGTGGGAAGAGGTGGCTGGTGTCAGGGCTGGTCCTCAGCAGCTGTGTCCCTGGCCAGGCTGGCTGGATGGTTGGTTCGCTGTCTGACGAGCAGCCAGCCCTCCACCAGCAGCTCCGGGGGCCTGGACGTGGGGGCTGTTTAATAGGCGTGCTGTGCTCACGGGCCTGTGTATGGATCCTGTTGTCCCGGGGCTGAGGGGCCTGGCCCCCGCCAGGTGGTCTCCCTGCTCTCTGGAAGCCCTGGGGTGCGGGACTGGCCCGGGCACACGCCTTGCCGAGGGCTTCTGGGCTTCTGGTTCTGTGGTGACCTCCCCACTTCCAGCCCAGTCAGGATGGGGCCTCGGGTGGGGGCCGCATGGGGCTTAGTTCCTGGGGGTATCCCGGAACCATGAGGGCTGGAGCCTGGGCCTGCCTGCCCCTCCCCTGCTGGGCAGAGGCAACTCGTTCTGCCTGTGTCATTCCCGGCAG
Seq C2 exon
AGACCCACCCCCGCCCCCCCAAGCCTGACCCCGTGAAAAGCGTGTCCAGCGTGCTCAGCAGCCTGACGCCCGCCAAGGTGGCCCCCGTCATCAACAACGGCTCCCCCACCATCCTGGGCAAGCGCAGCTACGAGCAGCACAACGGGGTGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182979:ENST00000331320:16
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=0.796 A=NA C2=0.942
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCCGAAGCCTCCCAG
R:
GTCCACCCCGTTGTGCTG
Band lengths:
231-1473
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development