RnoINT0094959 @ rn6
Intron Retention
Gene
ENSRNOG00000004711 | Mta1
Description
metastasis associated 1 [Source:RGD Symbol;Acc:621018]
Coordinates
chr6:137944190-137946341:+
Coord C1 exon
chr6:137944190-137944279
Coord A exon
chr6:137944280-137946188
Coord C2 exon
chr6:137946189-137946341
Length
1909 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGC
5' ss Score
8.72
3' ss Seq
TACCTCTTCCATTCCCACAGAGA
3' ss Score
9.61
Exon sequences
Seq C1 exon
GCACAGCACGGCTGCCCGAAGCTTCCCAGAGCCCACTGGTGCTGAAGCAGGTAGTACGGAAGCCCCTGGAGGCTGTGCTCCGGTATCTTG
Seq A exon
GTAAGCAGGATGGGTGGGACATAGGTTTCTAACTCTCATCCTAGCACCCCATCTAGGACACATGAAGTGATCACTAGGATACACTGTGCCAGGCTCAGGAGTGCCTGTGATCACTAGGATACACTGTGCCAGGCTCAGGAATGCCCGTGATCACTAGGATACACCATGTCAGGCTCAGGAATGCCCGTGATCACTAGGATACACCGTGCCAGGCTCAGGAGTGCCCGTGATCACTAGGATACACCGTGCCAGGCTCAGGAGTGCCCGTGATCACTAGGATACACCGTGCCAGGCTCAGGAATGCCCGTGATCACTAGGATACACTGTGCCAGGCTCAGGAATGCCCGTGATCACCTAGGATACACTGTGCCAGGCTCAGGAATGCCCGTGATCACCTAGGATACACTGTGCCAGGCTCAGGAATGCCCGTGATCACCAGGATACACCGTGCCAGGCTCAGGAATGCCCGTGATCACTAGGATACACTGTGCCAGGCTCAGGAATGCCCATGATCACCTAGGATACACTGTGCCAGGCTCAGGAATGCCCGTGATCACCAGGATACACCGTGCCAGGCTCAGGAATGCCCGTGATCACTAGGATACACCGTGCCAGGCTCAGGAATGCCCGTGATCACTAGGATACACTGTGCCAGGCTCAGGAATGCCCGTGATCACTAGGATACACTGTGCCAGACTTAGGAGTGCCCGTGATCACTAGGATACACCGTGCCAGGCTCAGGAATGCCCGTGATCACCAGGATACACTGTGCCAGGCTCAGGAATGCCCGTGATCACCAGGATACACCGTGCCAGGCTCAGGAATGCCCACGGAGAGCTGTGCTGTTTCCTTCTTCCTCCAGGCCCTGAGTTCCAGACACTCTGATTTTAACTTTCCTGGCATGCCCAGCAGCCCTGTGTCCTGGCTAAAGTTTTTGTTTGAGACAGGGTCTCTCACGTGGCCCTAGCTATCCTGGAACTATGTAAATCAGGCTGGCCTCAAACTGGAGATCCTCCCACCTCTTCTTCCAAAGTGTTGTGACTAGAGGCATGTGCTACCACTGATTTCTGACTAGGGTGTACACTAGGTATAACCTACCAACAAGTCCCTAGGGCAGGGTGGACACCTGCTGCTGCAAACAGGCCTCTCCCCAACATAGCACAGCATTGGAGGCTGCTGTGAGGCCTTGATGGGCAAGGTGCTTCTCTGGCTAGCAGCCGTGCAGGGATTTCTCCTTGCTTGTGTTTGTTTGGGGACTATTAATCTCTGGGCAGTGGCCATTTAGGAATGGCACGTCATGAGGTTGAGCCAGATGCGTGGGGTCACTTGTGTGCAGGGTTTGAGTGGACTTGAGTCGGTCCTCCACCATGGAGTCGACAGCTCCTCTAGAAAGGACATTCCAGAACCATAAGCTAAGTGCGTTCATTGCAGACACAGTGTCTGGCTTTGCTCCCTGGGTCCTGAGCCCCAGAAGCAGCCTCACCCAGGAGGGTGCCAGGATCTGCCTTTTGTGGGCAGGTCCTTGCTCGGGCCAGGCAGGCAGCTCAGTGTCTGGCCAGTAGCCAGCCTTCTGCCATCAGACCTGGTGGCCTGGGTGTGGACGCTGTCTGATGGAGCTGCTGTGTTTATGGGCTGTGTCTGGATCTTGTAAGCTCTTAGCACTTACCCAGCTGTCCTGTCCAAGGCATTGGGCGAGGCTCTACTTGGCTGTCACGCTTCCTGAACATACCCTAGGTAGCCTTCCTGCTCCAGTGCTTTGATCGCTGCTCCAGTGAGCTCTGGTAGCATAGGGACTGCCTCCTTCTAGCCTAATCAATCGATGGGCTCGGGGTAAGAAGGTGTTATTACTGCATGGAAGCTATGGTGCTGCTATTTCTGAACTACACCCTTACCTCTTCCATTCCCACAG
Seq C2 exon
AGACTCATCCCCGCCCGCCTAAGCCCGACCCTGTGAAGAGCTCATCCAGTGTGCTCAGCAGTCTGACCCCTGCCAAGTCAGCCCCTGTCATCAACAATGGCTCCCCTACCATCTTGGGCAAGAGGAGCTATGAGCAGCACAATGGGGTAGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004711:ENSRNOT00000006521:15
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (disopred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCCGAAGCTTCCCAGAG
R:
TCTACCCCATTGTGCTGCTCA
Band lengths:
230-2139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]