HsaINT0106320 @ hg19
Intron Retention
Gene
ENSG00000102043 | MTMR8
Description
myotubularin related protein 8 [Source:HGNC Symbol;Acc:16825]
Coordinates
chrX:63487961-63490953:-
Coord C1 exon
chrX:63490827-63490953
Coord A exon
chrX:63488924-63490826
Coord C2 exon
chrX:63487961-63488923
Length
1903 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CTTTCTTGCTCCTGAGGCAGAAA
3' ss Score
0.97
Exon sequences
Seq C1 exon
GTTCTGGTGTGGGATGTATAACCGCTTTGACAAAGGGCTGCAGCCCAAGCAGAGTATGCTAGAGAGCCTCCTGGAAATTAAGAAACAGAGAGCAATGCTGGAGACAGATGTGCATGAACTAGAAAAG
Seq A exon
GTGAGGAGAAAAGTCCCAAAGAGAGATCTTCTTGCCCCTTCTGGGTAGGTCCAGCCTGCTTGGAGTTGAATTGATACTTGTGGAAAGCTGACTGGCTGGCTTTTTTATACTCTTTGGCTTTTCATGTGTCCCGTGTCTACAAATCTCTGAGCATAACTCCTTTTCTTACTTCCCAAAATGTGGTAAATATGTCACTCAACTAGATAAACAAGTGAATTTGTTCCCTTTATCTCTTTTTGGATCTGGATGGAATGAATAGGAGGAACAAGAGGGAATGACTAGGGAAATCACATAGCATTTGTTATCCATCAAGAGAATAAGTATAACATCTTGGGTATACTGATAAGAACAGTGCAATTGCTGTTTTCCAATTAGGAAAATCTTACAAAAGAAGATTCTTATTTCCTTCCCATGTAAACTGCAAACTCTGCTTATTGAGTGACCATGTTGGACACTTGTTTTTTAATTACAGGTTACAGAAGTCAAAAAGTATTTCTTGTTGATTTCATAAACTGAGCTGCTTATGAAATGTAGGAATCCCTAAGGGTTTGTTTGAAGGACAGGGGAAAGGTACCTCTTAGAAAAGAATTATTGGAAATGGTGTGCTATTTAGGAACTGGGTGTGAACCCACTTTAAGCCAGATAAGGCATAGCTTTTCTGCTCCCTGTAAGTAAACAAATGTCATTTTATTGTGAAAATAAATGTGTTGTGATTACATCAGATCCCAAACTTTTTAATGTCCTCTTGGGAGGCAACAGCCAGTTACTTGGTTCCATTTTTTTTAAAGGTGGAGGGGGGCAAACTAAAGCATAAGTTAAAATCGTAGGAAACATGCATCCCCGAGAAGGCCCAGTCCTAAGTAGATTAGATGTAGTAGAGAAACTTCTTAACGGCTCCTCTTTTAGCTACTAGCAGATTCTTCCACAAGGCCAGGGAAGGTGCCCTATTATTGACCCAGCCCTCTCACTTATCCCTGCCTGACTCTTGAGAGAGAATCAGATTCATTTCACATATACCCAGATCACTCTAGAAAGACTTCCTTTTGAAGTGTGTATGTGTTTTTATGTATGTGTGTTATTAACTTTCTTTTTTTAATACAGAGCAGAAAAACAAAGCTGCTGATAATATCACCCAGACAACCCTGTTGACTTTTTTTTAAAGGCAATATAAGTGTTAAGTTAGAAAATACAGAATACAACAAGGTAAAAAATGAAAAGTTTAAAAGACTCCCCCCACCACCTTCAGAAAAATGTATGCATTTTTCTGAAGAGAAGGTCCATAATTTTCATCAGATTTTCAATGGGGACGTATGACCCCAAAGAATCACTGTTGTGAAGTATCAGTGAATCATTATATTATCTCTGAAAGTGAAAATATCTGTTAGAGGTAGCATGATGTAGACGACAGGTCATAGACTTTGGCATCAGGCAGATGCAGGGTCAGATCTCAGTTCTTTACTTTGTACATGTGCGAATTTGGGTGACTTACTTAACTTCTCTGAGCCTCAGTTTCTTCATTTGTAAAATATAGCTAATACCTAAACTAATAGGTTTATTATAAGGATAAAAGGAAATACTGTGTGTAAAGTGCCTAGCACATAGAGGTATTCAATAAATATTAGTGATGTTTTCCCCTGCCCTCTCCCCATCTCATGAACAAAATTGCACTTATCATAAAAGATGACTTTTATAGATATAAGACCTTTGACATTCTTCAATGGTAGGGCTTCTAAAGTACTATGACATGTGATGAGGGAAAGATGTTGTGGGGGAGGGGGTGAGCAAAAGGTCATTTGCTACCATTATAAGTGACAGCAATAGGATCTCTGCAGATCAAGGTAATGTTTGCCTAGTTTTTCTCCTGTTTCTAATTCTTCTCAACCCTTTCTTGCTCCTGAGGCAG
Seq C2 exon
AAACTAAAAGTCCGTGATGAGCCACCAGAAGAGATCTGTACCTGCTCTCAATTAGGAAACATATTATCCCAGCATCTGGGAAGTCCTTTGACCAATCCTCTTGGCTTTATGGGTATCAATGGAGACCTGAATACCCTGATGGAGAATGGCACCCTATCCAGGGAAGGAGGCCTCCGAGCTCAGATGGATCAAGTAAAAAGCCAGGGTGCAGACCTCCACCATAACTGTTGTGAGATTGTGGGCAGCCTTAGGGCCATAAATATCTCTGGGGATGTGGGCATCTCTGAGGCCATGGGCATCTCTGGAGACATGTGCACCTTTGAGGCTACGGGCTTCTCCAAAGACTTAGGAATCTGTGGGGCCATGGACATCTCTGAGGCCACTGGCATCTCTGGAAACTTGGGTATTTCTGAGGCCAGGGGTTTCTCTGGGGACATGGGCATCTTGGGGGACACAGGCATCTCCAAGGCCAGCACCAAGGAGGCAGACTACTCCAAGCATCAGTGAGTTAGTTACTCATCTTCCATGCTAGGTATACCTACAGCAGCTACAATGATTCTTGTCCCAGAGAGGGCTATGCTGCTTTTCCAATTGGTTTAAGTGGGTGAAGCCAGGGCACCCCTCTCCCCACTTAAGTCTGGAAGGGAATTACTTTACTGATTAAGTGACCAATATGTTCATATTAAGCAGTACAGAGTGTAGGCAAGAGAAAGAATATGTTATTGTTCTAAAATGGGATTTAACTATAGAAATGTTGCCTCTCAGCTGAGACACATATTAAGCTGGTTCTACTGTCTGTTTTCCTTAATGATCGACCTGCCCTATTTTCTATCCTCACTGCAGTAATGTGAAAGTGAAGTGGAAATATTGTCACAATGGTCAATAATGACCCTTTTGAGGGTATGGAGAGATGGTATACAGCAGGTAACTGTGAATTGCAGAATAAATTGAAAGAAAATTTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000102043-MTMR8:NM_017677:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=NA C2=0.109
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAACCGCTTTGACAAAGGGCT
R:
GCTGCCCACAATCTCACAACA
Band lengths:
355-2258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)