HsaINT0106320 @ hg38
Intron Retention
Gene
ENSG00000102043 | MTMR8
Description
myotubularin related protein 8 [Source:HGNC Symbol;Acc:HGNC:16825]
Coordinates
chrX:64268081-64271073:-
Coord C1 exon
chrX:64270947-64271073
Coord A exon
chrX:64269044-64270946
Coord C2 exon
chrX:64268081-64269043
Length
1903 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
3' ss Seq
CTTTCTTGCTCCTGAGGCAGAAA
3' ss Score
0.97
Exon sequences
Seq C1 exon
GTTCTGGTGTGGGATGTATAACCGCTTTGACAAAGGGCTGCAGCCCAAGCAGAGTATGCTAGAGAGCCTCCTGGAAATTAAGAAACAGAGAGCAATGCTGGAGACAGATGTGCATGAACTAGAAAAG
Seq A exon
GTGAGGAGAAAAGTCCCAAAGAGAGATCTTCTTGCCCCTTCTGGGTAGGTCCAGCCTGCTTGGAGTTGAATTGATACTTGTGGAAAGCTGACTGGCTGGCTTTTTTATACTCTTTGGCTTTTCATGTGTCCCGTGTCTACAAATCTCTGAGCATAACTCCTTTTCTTACTTCCCAAAATGTGGTAAATATGTCACTCAACTAGATAAACAAGTGAATTTGTTCCCTTTATCTCTTTTTGGATCTGGATGGAATGAATAGGAGGAACAAGAGGGAATGACTAGGGAAATCACATAGCATTTGTTATCCATCAAGAGAATAAGTATAACATCTTGGGTATACTGATAAGAACAGTGCAATTGCTGTTTTCCAATTAGGAAAATCTTACAAAAGAAGATTCTTATTTCCTTCCCATGTAAACTGCAAACTCTGCTTATTGAGTGACCATGTTGGACACTTGTTTTTTAATTACAGGTTACAGAAGTCAAAAAGTATTTCTTGTTGATTTCATAAACTGAGCTGCTTATGAAATGTAGGAATCCCTAAGGGTTTGTTTGAAGGACAGGGGAAAGGTACCTCTTAGAAAAGAATTATTGGAAATGGTGTGCTATTTAGGAACTGGGTGTGAACCCACTTTAAGCCAGATAAGGCATAGCTTTTCTGCTCCCTGTAAGTAAACAAATGTCATTTTATTGTGAAAATAAATGTGTTGTGATTACATCAGATCCCAAACTTTTTAATGTCCTCTTGGGAGGCAACAGCCAGTTACTTGGTTCCATTTTTTTTAAAGGTGGAGGGGGGCAAACTAAAGCATAAGTTAAAATCGTAGGAAACATGCATCCCCGAGAAGGCCCAGTCCTAAGTAGATTAGATGTAGTAGAGAAACTTCTTAACGGCTCCTCTTTTAGCTACTAGCAGATTCTTCCACAAGGCCAGGGAAGGTGCCCTATTATTGACCCAGCCCTCTCACTTATCCCTGCCTGACTCTTGAGAGAGAATCAGATTCATTTCACATATACCCAGATCACTCTAGAAAGACTTCCTTTTGAAGTGTGTATGTGTTTTTATGTATGTGTGTTATTAACTTTCTTTTTTTAATACAGAGCAGAAAAACAAAGCTGCTGATAATATCACCCAGACAACCCTGTTGACTTTTTTTTAAAGGCAATATAAGTGTTAAGTTAGAAAATACAGAATACAACAAGGTAAAAAATGAAAAGTTTAAAAGACTCCCCCCACCACCTTCAGAAAAATGTATGCATTTTTCTGAAGAGAAGGTCCATAATTTTCATCAGATTTTCAATGGGGACGTATGACCCCAAAGAATCACTGTTGTGAAGTATCAGTGAATCATTATATTATCTCTGAAAGTGAAAATATCTGTTAGAGGTAGCATGATGTAGACGACAGGTCATAGACTTTGGCATCAGGCAGATGCAGGGTCAGATCTCAGTTCTTTACTTTGTACATGTGCGAATTTGGGTGACTTACTTAACTTCTCTGAGCCTCAGTTTCTTCATTTGTAAAATATAGCTAATACCTAAACTAATAGGTTTATTATAAGGATAAAAGGAAATACTGTGTGTAAAGTGCCTAGCACATAGAGGTATTCAATAAATATTAGTGATGTTTTCCCCTGCCCTCTCCCCATCTCATGAACAAAATTGCACTTATCATAAAAGATGACTTTTATAGATATAAGACCTTTGACATTCTTCAATGGTAGGGCTTCTAAAGTACTATGACATGTGATGAGGGAAAGATGTTGTGGGGGAGGGGGTGAGCAAAAGGTCATTTGCTACCATTATAAGTGACAGCAATAGGATCTCTGCAGATCAAGGTAATGTTTGCCTAGTTTTTCTCCTGTTTCTAATTCTTCTCAACCCTTTCTTGCTCCTGAGGCAG
Seq C2 exon
AAACTAAAAGTCCGTGATGAGCCACCAGAAGAGATCTGTACCTGCTCTCAATTAGGAAACATATTATCCCAGCATCTGGGAAGTCCTTTGACCAATCCTCTTGGCTTTATGGGTATCAATGGAGACCTGAATACCCTGATGGAGAATGGCACCCTATCCAGGGAAGGAGGCCTCCGAGCTCAGATGGATCAAGTAAAAAGCCAGGGTGCAGACCTCCACCATAACTGTTGTGAGATTGTGGGCAGCCTTAGGGCCATAAATATCTCTGGGGATGTGGGCATCTCTGAGGCCATGGGCATCTCTGGAGACATGTGCACCTTTGAGGCTACGGGCTTCTCCAAAGACTTAGGAATCTGTGGGGCCATGGACATCTCTGAGGCCACTGGCATCTCTGGAAACTTGGGTATTTCTGAGGCCAGGGGTTTCTCTGGGGACATGGGCATCTTGGGGGACACAGGCATCTCCAAGGCCAGCACCAAGGAGGCAGACTACTCCAAGCATCAGTGAGTTAGTTACTCATCTTCCATGCTAGGTATACCTACAGCAGCTACAATGATTCTTGTCCCAGAGAGGGCTATGCTGCTTTTCCAATTGGTTTAAGTGGGTGAAGCCAGGGCACCCCTCTCCCCACTTAAGTCTGGAAGGGAATTACTTTACTGATTAAGTGACCAATATGTTCATATTAAGCAGTACAGAGTGTAGGCAAGAGAAAGAATATGTTATTGTTCTAAAATGGGATTTAACTATAGAAATGTTGCCTCTCAGCTGAGACACATATTAAGCTGGTTCTACTGTCTGTTTTCCTTAATGATCGACCTGCCCTATTTTCTATCCTCACTGCAGTAATGTGAAAGTGAAGTGGAAATATTGTCACAATGGTCAATAATGACCCTTTTGAGGGTATGGAGAGATGGTATACAGCAGGTAACTGTGAATTGCAGAATAAATTGAAAGAAAATTTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000102043:ENST00000374852:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.023 A=NA C2=0.107
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAACCGCTTTGACAAAGGGCT
R:
GCTGCCCACAATCTCACAACA
Band lengths:
355-2258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development