MmuINT0101991 @ mm10
Intron Retention
Gene
ENSMUSG00000021987 | Mtmr6
Description
myotubularin related protein 6 [Source:MGI Symbol;Acc:MGI:2145637]
Coordinates
chr14:60298915-60302370:+
Coord C1 exon
chr14:60298915-60299041
Coord A exon
chr14:60299042-60300272
Coord C2 exon
chr14:60300273-60302370
Length
1231 bp
Sequences
Splice sites
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
3' ss Seq
AACGTTTTGTTTTGCTTTAGAAA
3' ss Score
9.06
Exon sequences
Seq C1 exon
GTTTTGGAGAAACATGTACCACCAGTTTGATCGGACGCTCCATCCTCGGCAGTCTGTGCTGAGCATAATTATGAATATGAATGAGCAAAGCAAGCAGTTAGAGGAAGACATTAAAGACCTCGAGGCT
Seq A exon
GTGAGTATTCTGAGTTGTCTAATAAAGCATATTTGTTTAATTTACCATGTGACAGTGTCTTCCATTTTGGGTTTTTTGATTACAGATGAAGAGAATTTATTGGGCATTTCCTTTTTGTTTGTTGAGAATAAACTTCCAAATTTTGCTCATTTTTCTCTTGGCCTGTTTGTTTTTTTTTTTTTTTTTAATGTCAAGGTTCCTTAAATACTAGATACTAGATACTAATTCTCTGTTGGGGTTATTGCAAATAGCTTTGGCTTATTCTGATTTCTACATCTTACTGTTGTTATCTTTATGCTTTGCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACATATTATGTGTACATATATACACACACACACTTTTTTAAAAATGCTAGACAGTTCTTTTTTGTTCAGAGAACAGTCCTGTCTGCCTCAGAGATGGATGTTTTTCATTGTCTCTTAGGTAAGAGAGTGGTGACTGCTGGGGAAAACTAGAGGGCACATATTAGTGTTCAAGAAAGGGAGGGCAAGATAGGCAGCAAGGGACAGTTGTCTGGAGTTGATTTGGAGAGCTTGATGCTCTGCTATGGGACACTTTAAATATTACGTTAAAAAAATGTGCTACCTTCCAAAGGCTGATCTGTTCCCTTGGCAACCCGTCGTGAGGGATGCCTGTGAGAAGCTCGTCAGGGTCGGTGGGACCTTTAGCTGAGTTAGGTGTGATTGCTGTGTTACAGTGAATTCAGTCAGGTTGAGCATATCCTCTGTGTCCTTGTCCTGATGAAATGATTACTTGTTAAAGTTTCTAAGGAATATGTGTGTTTCTGGCATGTGCAGACCTAGTGGCCTATACAGTCAAATCTGGTTGAAACAATTGACAAACGTAAACACTTAATGAAGCATTTTCTTTGATAAATTTCAAGCTCTTGAGATTTCCTTTTTTTGAGGGGCTGGGGTTCGAGACAGTGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTCAGGCTGACCTTGAACTCAGAAATCCGCCTGCCTCTGTCTCCCAAGTGCTGGGATTAAAGGCGTGTACCACCGCTGCCCGGCTTGCTCTTGGGATTTTTAGTTATTGAGTTCATAATTGTGTATCATACACAAGGGGAACACTTGTAAAAGCATATTTTCTTCACTCCATGTAGATCGATCACCTGTTAGCTGTAGTTACTAATGTTTTTTCAACGTTTTGTTTTGCTTTAG
Seq C2 exon
AAAATTAAGCAATGCAAAAATGGCATCCTAACGAAGGAGTTGCTGCATGCTGTCCACCCTGAATCACCTGCCCTGAAAACCTCGCTGTGTCTCAAAGAGCCGAGTCTGCTTCCCGTGAAGGACACACTCCGAGCTATAGAGGGCAGCAGCCCAGCAGATAATCGCTACTGTGACTATGCCGAGGAATTTTCTAAGTCGGAGCCTACCGTGGTCAGCTTGGAGTACGGGGTGGCCAGAATGACTTGTTAGCCTCCTTCCGTGATCCCTGGATGACTGTAGTGTAAGAAATGTATAGTTGTGAGGATGGTCTGTACACATGGGCAGGAGGGGTTGTTGAGTGACTTTGGGGCTTAGCAGTAAGTGAGAAAGTAGGTAGCTGAGAAAAGGATCATAGCAACTCTTGAGAGGAGTGAGTCAGCTAAGTGCCATTTGTAACAAGAACATACTCATTTCTGTAGGAAGTGAGTGCTAGTGTGTGTATGTACTGGAAAGGGGTTACACAGGACTGGTGAGCTGACAGTCTGTTGATTCAGATGTTAATTCCAGCCACGCTCAGTAGCTTTCCTCTAACTCTGAGAAAACAGACCTGACAACCTGAACCCTCAGTGACTGATGTGGCATGTGCTTTCAGTTCTGGAGCTGTGTGACTGTGGATTTTGCAGTCACAAAAATCCAAATATATAGTCAAAAATATAGTGACGTTTTAACATTAAAGTGCCATGAAAAGTACTTATGGGACAGCCTTAAAGTAGACTCTCAGTTTATTCTGTGGGTTTTATAGCCGAGGACAGGATGTTTGATCTCTCCTTTAATCAGCCTTATTTCATATGAAGAACTAACTGCACTCTGATTACTTGGGGGCCGCACACTGCAGTGCTCCACCATGGAAAGTTGTAGACATACTCTGCTAGTTTGTAATTAGCCAGCTCCACCCGTATTTAAAATCAGTGTTACCGAAGGCTTTGTTCTCGTTGTCATTTGTTCCAAGCTGCAGCTGACAGTTCATTATTCACAGCTTAGAGGACTCATTTCTTAGGCTAGTATAAGCACATTTGGCATTTACTTTCGGCTTACTGCAGTCTATTAATTCTTACTCTGTGGTTGGCTTTAATCCTTTGATAACTGTACATTTAAAGTGGCAAAGCTCTAAAGCGTTCTGAGTACTAAATACATTTTTAACTTGACTGTAGCTGCCTATAAACTTTCAGGTAAAGGAAAAAGGGAAGTGCGGGTAGTGGAGATTTTGCTTGGTTACGAATTCTAAAGCAATCATTTTTGTGTGGAGCATATTTCCTTACTCTTAATATAGGAGGGGCAGAGAAGGGAGCACTGGGGGAGCCAGCTAATGTCCAACAGAAGCAGCTTTGACGCAGGAAAAGGTTTATTTTGCTTTATAGGCTCATTGTTATTCTGTGCACTGGGGCATACATATCTTTTCTAAAAAATCACTTACAACTGTCAGTATTACCAGCTGGCTCTCAAAGTTTAATATCATTGATGGTGTGTGAGGTACAGTTCAGGGGCACTACAAAATCTGTGTACATTGTCTTATATACCTCCTGACCACACCTATATCTGTAGTATTTCTTGTGTTAGTTTTGAACATATGTATCTTTTTTTTTTTTTTGGGAAAAAAAAGGAAAGCTTTATCGTATATGATTTTATCTAGTCCTTATTTTTCCAATTCACTTCTGTAAGACCTTATGTAATAAAAACACTGCATTTTAAAAAGTAACAGAAATATACTAAAAATTACAATGTATAATGAACAGTGTTTAGACATTGAGAAAGGAAACTTAATCTCTGTGTCCACAACAGGAGGGTTTTGTGCCTTGGTTCCAGTCAAGTTGTGGTTTTAGACTTCTGTGGCAGACTTCCTAGTCATCTTCTGGGTTCCTTATGCTAATTTTCAACTTCACATGTATATATGTGTTTACATGCTCACACAGAAAACATCCTGAGTGACGTACAGGACATACGTTGGCAAAAGTCTGTGTAAATGTCTCATAAAATTAGATTTATGTTCATTGTGTTTTGGGATGTATAGCATGTAAATTATTTCATGTATTATTTAAAGGCAATTAAATGTTCATGCTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021987:ENSMUST00000022563:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTTTGATCGGACGCTCCAT
R:
AACAAGTCATTCTGGCCACCC
Band lengths:
352-1583
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types