GgaINT0115701 @ galGal3
Intron Retention
Gene
ENSGALG00000017112 | MTMR6
Description
NA
Coordinates
chr1:181407295-181409910:+
Coord C1 exon
chr1:181407295-181407421
Coord A exon
chr1:181407422-181409414
Coord C2 exon
chr1:181409415-181409910
Length
1993 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
3' ss Seq
GTAACTATTCTCTATTTCAGAAA
3' ss Score
8.63
Exon sequences
Seq C1 exon
GTTTTGGAGAAATATGTACCATCAGTTTGACCGAAGCATGCATCCCAGGCAGTCTGTGTATGATCTTATCATGGACATGAGTGAACAAAATAAACAACTGGAGGAAGACATTAAACAACTGGAAGCT
Seq A exon
GTAAGTAGTACAAAATAAGTGTATTTACTTGTGATTTGTTCTTCAAATTCATGTAAAAAGCCTGTAGTAATGCTGCTAGCTTTTATATGAATGTTATTGTTCTGTGTCCCAGTCCTTGCTCTACATAGTGTTGAATTCACCTTTTCACTGTATGCTTCTGTGCTCTTAAATACATGATACAGTTATTTGGTAAGGCAAAATAACTTGTAAAACTGCTTCTACTACCAAAGCAAGACTGGAGGTGGTGTAGTATAGGTTGAATTTGTGGAACATAGCTGTAAACAGTGGTGCTAAACTAAATAGGCTAAAAATGTTTTATTTCAGCTGTAGCTACTAAAACAGGAGGCCCTAATCATTGTCCTTCTTTCCTTAACTACATATGCAGATGCATAGAACTTTAAGTTACCTTAACTATGGGATATATGCACTGGATATAAATGCAAGTAAGCATTACACAGAGACAGGTTTCTGTGACTGCTGGTCTGCTACAGTAAACAGTCAGGACTGAACAGAACATCTCAGCTGATTCTGCTGTGGATTAATGAGTGGTGTATAACTGATGCTGTTTTATGCCAGTTAAGGTGCTAAACTCCAAAATAATTTCTCTTAAATGCAAAAACTTTTCTAATGTACGTGCAGTGGAATTGTCAGATCATGGCCTGAACCAGTGAGTACCAGGTGAGAAGGCATGGCTAACCCAGGGAGCTCAAGTGCAAGCAATGCACCTGAGTAATTGGAAGGAGTGGACCCTGGGTCTGCCCCTCCTTACCCTCATTGAAGTGTTAGCAGCTGAGGGAGCAGTGTGTCTCTGGATAGAGATAGCATTCCTCTCAAACCATCACCAGTTGTCAGAAGGGGTGAGCTAATGTTTGTTTTTTTGTCCTCTTCTATTGCTCCCTAGTGCTTGTGTCCCTGAGGGTACTGTTTGTTATTGCTGCCTTCTGCTGCACAGTATGAAATAAGGGTTGTATTTCTTTTGGTTGCTAGAAATGATGACACTTAACTCCTGCTTACTGTGTTGGGGCAGGGGAAGGGAGGGTGTTCTTATGAAACTAATTCTACCCTAATATAATGAATTCAGGTCTCTTAAAATGAACTCTATTTCAAGTCTTAGTTATCTATTTAAAATGTGTTTCATAATCGACGAATGAAAGTGAAAATTGAGGATGAAGCAGGATGCAAAATAAGCAAGATGAAAATTCAGAACGGAGACTTCGTTGTTCCAGAATCTTGCTGGGAGGTGTGAACTTCACCTGGGCATTTCTCACCGGAATGAATTTAAAATATTGTCACAGACATTCCTGCTGCTGTCTGCATCTTCAAAAAAGTTTGTGTTAATAGTGAAGTCTTCTGGATTCAGTGTAGGTAATGGAGCATGAAGACATCAACAAGAGGAAAAAAGAACTATTTCAAACTTTGAGTTATGAGTGAGACAGTTTGAATTAAAAAATCAAAACCAACACCCTAACTAGATCTTCCCTCTTCTCTTGCTCTGTGCTTTCAGAGTAGTCTTTTTCTACCTACTTTCTAGTTAAGTCTTGTAGGAAGTTTTTAGGAAAGGAAATAAGGGCTTGTGACACTGCTTTTTCTCTCTGTAAGAGACTTCTTTTCTGCTGCAAGCTCCCTGCTTGCTGTTAGTACTGAGGCCTCTGTTTGTACTCCAAAATGTATTCCTGTCCTAATAGCAATCAGACAAGGGACAAGCCTGAAAGTATTTCTCCTTCACTATGAACTAACTATGAACAACTTCCTCTCTTCTGCTCAGCTGCTCTTTGTAAGCATACGGTGCTTGTAGCATCTGTTGTAAACTGTAGAAAAATGTTAGTTTACCCAGTGGTGTAACGCTTACCTTGTTACATATCTAGTCCAGGGTGTATAATAAAGGGTTCTGCACAAGTTGAGTTGGTGAGCAAAGTGCATTCATCTGCATTCAAGCCAGAATGTCATCAGTGGATCGGTGGTGCTTACTGTTAGTAACTATTCTCTATTTCAG
Seq C2 exon
AAAATAAAGCGGAAGAGTGGGCAGTCAGATGTAGTCCTCCTGAAGGAACATCAGCAGTCTGCTCATCCTGCACCAGTGATGCTGAAAACCCCGCCGTGCTTCAAGAAGGACCAGCCTTTGATCCCTCTCAATGATGCTGTAAGAACTATAGAGGGCAGCAACACAGCAGACAATCGCTACAGTGAATTCATGGAAGAGCTTTCAAAAGCTGAGCCTGCTATTGTCAGCTTGGAGTATGGAGTGGCCAGGATGACCTGTTGAAATCTGGCACAGTGCTCCTCTGTCTTAGACTGGCTGAGTTAAAAGACAGATTGTTTTTGAGGATGGGTCTGTGCTGCATGACCAAAACATGATTTGTATATTGGCAAGTTTTGTTGACGTAGACTAGAACAGCATGCTAGTTGTCAGGTGTTTGCTGTTCTTTATACGCATATAAAAAAGTGTAGTTGCCTCTATTTCTTTTAAAATACACTTGGTAAGTAGTGACTAAAAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017112:ENSGALT00000027648:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.186 A=NA C2=0.256
Domain overlap (PFAM):
C1:
PF097894=DUF2353=FE(29.6=100),PF130941=CENP-Q=PU(22.8=48.8)
A:
NA
C2:
PF097894=DUF2353=PD(25.4=41.4),PF130941=CENP-Q=PD(75.0=79.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGTTTGACCGAAGCATGCA
R:
ATCCTGGCCACTCCATACTCC
Band lengths:
357-2350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]