RnoINT0095397 @ rn6
Intron Retention
Gene
ENSRNOG00000012918 | Mtmr6
Description
myotubularin related protein 6 [Source:RGD Symbol;Acc:1305378]
Coordinates
chr15:40593992-40597309:+
Coord C1 exon
chr15:40593992-40594118
Coord A exon
chr15:40594119-40595305
Coord C2 exon
chr15:40595306-40597309
Length
1187 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
3' ss Seq
TTTTCAATGTTTTGTTTTAGAAA
3' ss Score
10.35
Exon sequences
Seq C1 exon
ATTTTGGAGAAACATGTACCACCAATTTGATCGGACGCTCCATCCCCGGCAGTCTGTACTGAACATAATTATGAATATGAATGAGCAAAACAAGCAGTTAGAGGAAGACGTTAAAGACCTAGAGGCT
Seq A exon
GTAAGTATTACTGTCTGTCAGTGTCTCCCATTTTGGGTTTCTTGATTACAGATGAAGAGAATTTATTGGGCATTTTTTGTTTGCTTGTTGAGTATAACTTTCAAATATTTTTCTTGGCCTGTTTGCTGTTTTGTTTTGTTTTGATTTGTCAGGGTTCCTTATATACTAGATATTAATTTTCTGTTATTCTGTCTGCTTCCTCTTACTGTTGTTATCTTTATGGTTTGTCGTGTGTGTGTGTGTGTGTTGTGTGTGGTGTGTGTGTTGTGTGTTGTGTAAATTCTCTTCTACCTAAGCTTTTCCTCTAGTCATTTCTTCTGGCCTTATATGTATAACCAAAAAGGATGGGGTAAACTATGTATGTGAATACACACCACATATACTATAATACAAACACATAACTATACACACACATACACATACACACACATACACACACACTGTCACACAGATACACACACTCACACACACACACACACAACACATCACCCACTTTCACACATACAAACACTTTTTTTTAATGTTAGATGGTTCTTTTTTGTTCACGGAACTGTCCTGTCTGCCTCAGAGACAAATGGTTTTCACTGTCTTGGGTAAGAGACCGGTGACTGGGGTAAATTAGAGGGCACATATTAGTGTTAAAGAAAGGAAGGGTAGGATAGGCAGCGTGGGACAGTTGTCTGGAGTTCATTTGGAGAGCATGATGCTTTGCCACAGGACATTTAAATATTAGGGTTTTTTTTTAAGTTGTGTTACTTTCCAAAGACTGATCTGTTCACTTGGCAAACCTCAGTGAGGGACACCTGTGGGAAGCTTGTCGTGGTCAAGCTTCAGCTGAGTAAACTGTGATTGCTGTGTTAGTGCAAATTCAGGTTGAGTGTACCCTCTGCATCCTTGTCCCTATAGAATGATCACTTGTTAAACTTCCTAAGTGATATGTGTGTTTCTGGCATGTGAAGACCTAGCGTCCTATACAGTCAAATCTGGTTGAATCGATTGGCAAACATGAACACTTAATGAAGCATTTTCTTTGATAAATTTCAAGTTCTTGGGGATTTCTAGTTACTAATTCATAATTGTGTGTCATGCACAAGGGGAGCATTTGTGAAAACATGTTTTCTTCGCTGCACATAGATTGATCACCTGTTAGCTGTAGTTACTAATGGTTTTTCAATGTTTTGTTTTAG
Seq C2 exon
AAAATTAAGCAATGCAAAAGTGGCATCCTGACGAAGGACTTGCTGCATGCCGTTCACCCTGAGTCGCCCAGTCTGAAAACCTCACTGTGTCTGAAAGAGCAGAGTCTGCTCCCGGTGAAGGACACACTCCGAGCTGTAGAGGGCAGCAGCCCAGCAGATAATCGCTACTGTGACTACACCGAGGAGTTTTCCAAGTCGGAGCCTGCTGTGGTCAGCTTGGAGTACGGCGTGGCCCGAATGACTTGTTAGCCTCCTTCAGTGGTCCCTGGATGGCTGTAGTGTGAGAAGGGTCTGTACACACGGGCAGGAGGTCTGAGTGACTTAGGGGCTTAGCAGCAGGTGAATAGCTGAGAAAAGGTAGCAGCTCTTGGGAGGAGTAAGTCAGCCAAGTGCCACTGGCAGCGAGCGAGTGCTGTTGTGTGTGCTTCCTGGAAATGATTTACACAGTGCTAGTGAGCTGGCAGTCTGTTGATTCAGATGTTAATTACAGCCAAACTCAATAGCTTTCCTTGAGTGTAATGTAACTCTGAGAGAACAGACCTGACAACCTGAACCCTCAATGACTGACATGGCATGTGCTTTCAGTTCTGGAGCTGTGGCCGTTTGCGTATTCTGCCACTTAGTGACATTTTATTGAAGTGCCATGTGAAGTACTTCTGAGACAGCCTTAAAGTAGACTCTCGGTTGGTTCTGTGGCCTTTATAGCCGAGGACAGGATGTCTGATCTCTCCTTTAATCAGCCTTATTTCTTATGAAGAGCTGCACTCTCATTACCTGGGGGCCGCACACTGCAGCGCTCTACATGGAGAGCTGTGAGTACTCCGCTAGCTAGTTCGTGATTAGCCAGCTCCACCCGTATTGAAATTAGTGCTACGGAAGGCTTTGTTCTGGTTGTCAGTTGTCTCGATCTGCAGCTGACAGTTCATTATTCACAGCTTAGAGGACTCATTTCTTAGGCCACTATAAGCACATTTGGCATTTACTTTCGGCTTACTGCAGTCTATTAATTCCTCCTCTGGTTGGCTTTAATCCTTTGATAACTGTACATTTAAAGTGGCAAAGCTCCAAAGTGTTCTGAGTACTACATACATTTTTACCTTGAGAGCAGCTGCCTACAGACTTTCAGGTAAAGGAAAGGGGGAGTGCTGGTGGTGGAGATTTGCGTGGTTATGATTTTAAAGCGACCATTTTTATGTAGAGCATATTTCTTTTCTCTTAATATAGACGGGACAGAGAAGGGAGCACTGAGGGAGGCAGTTAATGTCCAACAAACGGCAGCTTTGACGCTGGAAAAGGGTTTATTTTGCTTTGTTGGACTCATTGTTTATCCCATGCACTGAGACATACGTATCTGTTTTTTAAAAATCACTTGCAATTGGCAGTATTACCAGCTGGCTTTCAAACAAAGTTTAATACCATTGATGGTATAAAGTACAGTTCAGGGGCACTATGAAATCTGTGTATGTTATCATATATATCTCCTGATTATATCTATATCTGTAATATTTCTTGTATTAGTTTTGAACATAAGTATCTTTTTTTGGAAAAAAAAGCTTTATTGTATGTGATTTTATCTAGTCCTTATTTTTCCAGTTTACTTGTGTAAGCCCTTATGTAATAAAACACTGCATTTTAAAGCATAACAGAAATATACTAAAAAATACAATGTATAATTAACAGTGTTTAGACATTGGGAAGGGAAACTTAATCTCTGAGGCCACACATGAAGTTCCGTGCCTTGGTTCCCGTCAGGCTGTGGGTTTAAACTTCTATGGCAGACTTCTTAGTCATCTTTTCGGTTCATTATGCTAATCATCAATTTCACATGTATATATGTGTTTACATGCTCACACACAGATAAGATCCTGAGTGACGCACAGGGCATATGTTGGCAAAAGTCTGTAAATGTCTTATAAAATTAGGTTTACATTCATTGTGTTTTGGGATCTATAGCATGTAAATTATTTCGTGTATTATTTAAAGGCAATTAAATGTTCGTGTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012918:ENSRNOT00000065328:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.047 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF097894=DUF2353=FE(35.0=100),PF060089=Laminin_I=FE(39.6=100)
A:
NA
C2:
PF097894=DUF2353=PD(12.5=18.1),PF060089=Laminin_I=PD(29.2=37.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAATTTGATCGGACGCTCCA
R:
GCTAACAAGTCATTCGGGCCA
Band lengths:
356-1543
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]