DreINT0098744 @ danRer10
Intron Retention
Gene
ENSDARG00000037101 | mtmr7a
Description
myotubularin related protein 7a [Source:ZFIN;Acc:ZDB-GENE-060421-7754]
Coordinates
chr14:30070478-30071827:+
Coord C1 exon
chr14:30070478-30070604
Coord A exon
chr14:30070605-30070787
Coord C2 exon
chr14:30070788-30071827
Length
183 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGA
5' ss Score
5.94
3' ss Seq
TATTTTTTTTTTTTTTGCAGAAA
3' ss Score
10.94
Exon sequences
Seq C1 exon
ATACTGGAGGAGGTTGTATAATCGATTTGACCGAGAGTTGCACCCACGTCAGTCTGAGCTGGATTGTCTGATGGCAGTAAAAGACGAAACGCAGCAATTAGAAGAAGAGATGGCTCTCTGTGAGCAG
Seq A exon
GTTAGATGTTGTTTTTGTATTTTACACAGAGATGATAATGGTTTCATTTTTATTTCATTTTGAAAACTGCATTAAAATGTAAGCATTTTCTTCCAAAAGCCCTACTTTTGAGTATATGATATAGGAATTTTTCCTTTACATTGAAAGTTATGTGATTGAATTTTATTTTTTTTTTTTTTGCAG
Seq C2 exon
AAACTGGCTGTTCTAGATAAGGAGCGTGCAAAAATTCTTTACATGCAAAAGGGTGTGTTAGAGAGCAGGCAGGCTCTTTGGTCGGTACCTTTAGATGTAAGTCTGGCCAATACACCTCAGGATTACCTTGGTGGTTTTATAGGTGGTGCTCCCAATGTTTTCACCTCACAGCAAGGAGAGAAAGAAAGCATAGAGTTTAGCCTGTTTGGAGACAAACCAAAAAGTTCAGATGCTGAAAATAGCGACCAGGAATCAGGAGTAGCAGATTTCAGCTGCCATTCTTCTGGCGAAGAGTCTTTGCCAAGTGAGGACAGTGTGAAAGACTCAGACGAGACTGGACACAACAGAGCCTGAACAAATGCAAGTCTGCAAAAAGCAAACACTAATGTGTCTAATGTATGAGCAAAGTGAGGGAGTGGGTATTTTTAAATTATGCAAAGATATTGGACCATCTGGATTATGTGCCTCATGTCATGTGTTTGGCACTACAGAAGCATGTCTCTGTCTGAATGTGTATTACGGGTGTTCCATATAAAGAGGGATGTTTTATTCTAATATATATTTATAATTTCTCATTAGCATGGAATATTTCAAACATTAAACACCTGTGTGCAATAAATGTTCTCAATTTTTATTTCTTTTTTGCACTTTATGCACTTGAAAATATCCAAAGCACGTAAAAAAAAGATTTTTTGTGTGAAATTGTGATATTTCAATCTTCAAGTCTGCTTTAAGTAACTTATTTACAGTGGTTTGTTTTTAGCAGATCTAAAACTAAGAGCTTGGCACATATTGTCAAAAACAAACTCAAAGAGCCAAAAGAAAATGACCCAATAATTACAATTGTGATTAATATTATTGATATTTAATAAATCATGCTTTTTGTGGTTAATGGAATTTATGTTATAATGTACTCATTTTGAAGGAATATTGGAGACAATTCACAGATTATAGTGAATAATGCTTTAACTTATTTACATGTTTCTCCCAGCTGTGTGATGTTGATGTCCATACAAATAAAGGCAAAATTAAAAGAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037101:ENSDART00000053925:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.453
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGATTGTCTGATGGCAGT
R:
TCTCTCCTTGCTGTGAGGTGA
Band lengths:
251-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]