MmuINT0102004 @ mm10
Intron Retention
Gene
ENSMUSG00000039431 | Mtmr7
Description
myotubularin related protein 7 [Source:MGI Symbol;Acc:MGI:1891693]
Coordinates
chr8:40551101-40554397:-
Coord C1 exon
chr8:40554271-40554397
Coord A exon
chr8:40551914-40554270
Coord C2 exon
chr8:40551101-40551913
Length
2357 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGA
5' ss Score
6.42
3' ss Seq
GTTGTTATTTATTTTTTTAGAGG
3' ss Score
6.74
Exon sequences
Seq C1 exon
GTTTTGGAATGGGATGTATAACCGCTTTGAAAAGGGGTTGCAGCCTCGACAGTCTGTTACAGATTACCTCATGGCTGTGAAGGAGGAGTCCCAGCAGCTGGAGGAAGAACTGGAGTCCCTAGAAGAA
Seq A exon
GTAAGAGTCTTGCTATTGTTTATATTTTCCTGTGCCCCTGTCTTGAGCATTACCTCGAGGAAGATCCTCAAGATCTGGAATATAAATGTAGCACAAGCCATTTTTAAGTCAGTGGGTCAACACCCAGACAATGAAGCCCAAACCTAACACTAAGCCATCTGTGTTAGTTTTTGGCTCACTTCAGTTTGTAGAAATCCATTACTGGTCAGTACATTTTATTTTTCCCATCATCATCTTTCTTTTTTTTTCAAGTTTTCTTAAAAAAAAAAAATCCCAAAACTCATGAAAATATGAAAAGGCAAAATTGAATACATTCAAATGAATTAAAACCTTCTGCTCTTTTAAAATTATATGTTAATACTGCATTGATATGTAAATAGCTGAGATTGGTTATATAATTTTTATTATTGGGCAGAGACGTGTTGTACATAAATGCATTTCTTACTTGCTGCCTTCATCTTAAGTGAGTATTATTTATTCTGCCCCATTCATCATAATTCTACCTCAACATTCACTTGCCCAAGAACTGGCTATAAATTCCCACTGTTTGGAACTTGTATTTTCAAGTTAGAATCAACGTTTTAACAGAATGAGATGGGGCTGGAGATGGCTTAGTGGTTAAGAGTTCTACTCTCACAGAATGTCTGCTTTTAGTTCTCAACTAGTTTAGTAGCTCAACTAGTTTAGTGGCTCACAACTATAGGTAACTACAGTTCAGGGCATCTGATGTCTCTTAATTTCCAGACATTGGATATTGGATACATTCAGGTACCCAATGCTGTACATCACTGGAGAAGCAGCTCTAACTACGTGCAGCAAGATCACTATTTTATAATGAGTTCTGGTACCTGAGTGTAATTCTTACATTCCACAGGTTCATATGACCCACGTGACTATAGAGGTAGGAGTAGAGCTGAGACCTTGGATTGAAGTACGAACTCAGAGAACTGAAATTAAACTGAGATTAAACTTACAGTTTGGAGGCCAATTTATTTTTCACAAGCACACCCAGTTTTCTATATTTTAGGACCTTGCTTATTATAACGTTCTTTTGACTGAAAATTGGTAAAGTTATAAACAAGATATATAGGATATCAAAAAGTACCTTAATATTAAATGTTCCTTTATTTCTTTAAAACAGCTAAAGTTTCTTAGCATAGTATTCAAGGTTTTCCCATAATGCATCATAATCCCTTTCCGTTCTCATTTCCAGTGCTCCCCATTTAATTCACATTTTCTGCTTCCTACCTCTGTGGCCTTCTAACCACTGCAAGATCCCAGGCTCTGCTTTTTCAGACTTTTTACACTGCTTTCTGTGCTCTTTCCCTGAAAACCATCTTACCGTTCTGAAATGAATATAAGAACTGTGCCCATGTGTGACAATCTGCAGATGTGCTATGGCTGCGTCTGGATTCGCTGTGTTCCCCCTATGGTCCAGCACAATTCTTCTGCACTAAAACTAAAACCCCTTAGGAATGCTTCTGAATGTGTAATGCTTAATTTTCACACACTCCCTACTTATATTAAAGGATACTGAGGTAAAGCATATGTGGGACAGCCAGCCTGCAGTGATTTGGTGGAGGAACAGCATAGACATGTGTAAGAATGTAATTGCGCCCTAAGAAGGAGAGAATTCCTGATATTTGAACACAGGAAGACCAAAAACCGGTGCTTATTATAAGAGACTTGACACAAAATGCAACTCTAGGGAGGAGGAATAAAATTACATACTTTGAAATGATACATTTTCTAGCGAGTCCTATTTTGATGAAATACATACATCATTCTTACCTTAGAAAAACATACTTAGGGGATAGAGAGGTAGCTCAGCCTCTAAGAGTACAAACAACTCTTCCATCAGACCCAGGTTCAATTCCTAGCACTCACATGGCAGCTTACAATTCTCTGTAACTTTATTTCCTTAGGGATCCAACAGCCTCTTTTGACCTCCACAGGTACCAGGCACACACATGGTGTACAGACTTAAGTACAAGCAAATACCTATATACATAAAACAAATGTTTCAAAAATGAAAAAAGTTTAGTGTTAATACAATGCAAATAATTATGTCAAATTGTATAGTCATTTAAAAAAAAGTGTGGGGCTCCATTTCCAGGTAGTGTACTATATTGTATTGTTCACATCGTAGACAGTCTTACCAAGGCGCTTACTACCATCCTTGTATTAGAAAGCAAGCCTCTCGGTTAGTTTTGCTGACGTTCATGTCCTCTGGTTTTCAACTGCCACAAGAGTCTTGTCCTTAATGTTACCCTCAACTGGGAGGGAGTCAAAGGTATGCAAATATATATGCAAGAATAAATTGTGACGTTTCTTAAAGTTGTTATTTATTTTTTTAG
Seq C2 exon
AGGCTGGAAAAAATTCAGAAAGTCCACTTACATGGTACCAAAGTGAAGAGTAAGCAAAGTGAGCCCAGCAAACACTCGGGGTTCTCTACCTCAGACCACAGCACAGCCAACACCCCTCAGGATTACAGTGGGAACAGCAAGTCCTTCCCATCCAGGAGCCCGTCCCAGGGTGATGAAGATTCTGCTCTGATTCTAACCCAAGACAATTTAAAAAGCTCAGACCCCGACCTCTCAGTGAATAGTGATCAAGAGTCTGGGGTGGAGGATTTGAGCTGTCGATCTCCCAGTGGTGGTGAGCATGCACCCAGCGAAGACAGTGGCAAGGACCGGGACTCGGACGAAGCTGTGTTTCTCACTGCCTAAGTTCCCCTTTGGAGTTCCAAAGTAAAAGACACAGAAACACTTTCAAATTAAGGGGAAAGTGCAATTCGTAGTAAAAATGTTGAGAAATGGCAAGTTCTATCCAGAACCATAAAATTACAGCTGTGAAAATGGGGAAAAAAAAGCTCTTTATCAATAACCAGTTGTTTTATCAAATCATACTGAAGACTGATCATCATTCCTGAGGCTCATGCTAGACTATGAAAATTATATCACTACAAGGAGAGAGAGTATCTTCACCCAAGGTTGTCCAGACAGTCTTTCCTGGCATAGCATGTGTCTGCTTAAAAGCCCTCCTGGTTTCTCCCATACCTGATAATGTTGGGACTTTGATTTCACTTCCAGTTGCAGGTTGCATTCAGGAACTTTGACATTTCCTTCTGCCTTTACCAATATTTAAAAGAAATAAATATGGAGAGTACCCTTTTCTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039431:ENSMUST00000048898:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.223 A=NA C2=0.983
Domain overlap (PFAM):
C1:
PF093326=Mcm10=FE(30.7=100)
A:
NA
C2:
PF093326=Mcm10=PD(59.9=67.8)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types