BtaINT0096146 @ bosTau6
Intron Retention
Gene
ENSBTAG00000010372 | MTMR7
Description
Bos taurus myotubularin related protein 7 (MTMR7), mRNA. [Source:RefSeq mRNA;Acc:NM_001075641]
Coordinates
chr27:19012393-19014503:+
Coord C1 exon
chr27:19012393-19012519
Coord A exon
chr27:19012520-19013466
Coord C2 exon
chr27:19013467-19014503
Length
947 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGA
5' ss Score
6.42
3' ss Seq
AACTGTGGTTTCTTTTCTAGAGG
3' ss Score
9
Exon sequences
Seq C1 exon
GTTTTGGAATGGAATGTATAATCGCTTTGAGAAGGGACTGCAGCCTCGACAATCAGTCACAGATTACCTCATGGCCGTGAAGGAGGAGACTCAGCAGCTGGAGGAAGAACTTGAGGCCCTGGAAGAA
Seq A exon
GTAAGACAGTCGCTCTTGCTCACCTTATTTGCTGACGATTGCAGCTCTGGGAAAAGCCTCTCGTGACTCAGGATGTGTGAAATGCAGCAACACAGCCATTTCATATTTTTGTGCTCAGTTGTATCCAACTCTTTGCGACCCCATGGACTAGTCTGCTAGGCTCCTCTGTCCATGGGATTTCCCAGGCAAGAATACTGGAGTGGGTTGCCATTTCCTCCAAGGGATCTTCCTGACCTAGGGATCGAACCTGCATCTGTTTGTGTCTCCTACGTTGGCAGGTGGATTCTTTACCACTGTGCTACCTGCAAAGTCCTTTCATATTTCTAGCCAGAAGGTAACCTGAAACACAATCCTACCAGGTGAACAGTCAGATCATCGAAGCCCAGACCTACACACTTGATGCATTTCAGACATCTGGTTTGGCTCATTTCCATAGTTTGCTTTGGGGATGATGAAGATATTAGGAAACGAGATAGTGGTGAATGATTGCATAACCTTGTGAATATACTTATATAAAAAACAAAAAACCTGAACTGTACACTTTAAGAGAGTGAGCGACTTCTATCTTAATTTTAAAATTTAGATAATAAAAACCTCATTCCTGATATTTAAAAAAAATGTACTTTCGGTTCACAGGATGAAAATCATTATGTAAAACCACACAGGTACAGAAAGAACGATGACTACTCTTTGCCAGGTGCTTTACCTAGGCTGTGTTTTCTGCTTTTTTATAACGTGCCATCCTTACATTAGGAAGAGAGCGAGCCTCACAGAATCTAATTATTTTGTCCAGAGTCATAAAGTCTAGCTTTGAAACCAAGTCCATCTAAATCCCATTTTCTTAACGTTTCACCCAGCCGGGAGATAATGGACACTAAAAGGCAGGCACGTACCAAAAAAGATACATTCTTTATGACTGTTCCCTGAAACTGTGGTTTCTTTTCTAG
Seq C2 exon
AGGCTGGAAAAAATTCAGAAAGTGCAGTTAAATCGCACTAAGGTGAGGAGTAAGCAGAGTGAGCCCAGCAAACACTCAGGATTTTCTACCTCGGACAACAGCGCAGCCAACACCCCTCAGGATTACAGTGGCAATGTGAAGTCCTTCCCATCCAGGAGCCCTTCCCAGGGCGATGAGGATTCTGCTTTGATCCTCACTCAAGACAATCTGAAAAGTTCAGACCCAGACCTGTCCGCCAACAGTGACCAAGAGTCGGGGGTGGAGGATCTGAGCTGCCGCTCCCCCAGCGGTGGGGAGTGTGTGCCGAGTGAGGACAGTGGCAAGGACCGGGATTCCGACGAAGCCGTGTTTCTCACTGCCTGAGGATCCCCCGCCATGGAGTTCCCAAGTAAAGGACACACAAGGAACACTTTCCAAAAATAAGGGAACAGTGCAATCTCAAATAAAAACAGCCCAAGAAATGGTACGGGTCATCGAGAATTATAGAACGTAGCTACGAAAAGGAAAAAAGTCCAACTTCAAGTTCCTTTAGGTGTTGATGAACAGGAAACAGCCATTTCTTTTCAAGCAAATTTAAGGAAAATTGTTCCCCCTTCTAGACTATGGAGGTTTTATTCACTACAGAGCAATGACCTCACCCGAGGTTATCAATTCACATCTTCCTTGCCTGCAGCTGCTTAAAGTGCCCTGACCACGTTCCTTCACACTCATATTCAATCTTTCCTTTTAGTTCATTTCCAGATGAATATTTTGTTTCCTCAAATATTTCACACTTCCTTCCTTCTTGACTCTGTTATCAGGATTTTTGTTAATAGATATATTTCTGTAACAGATGAGCTTTGTAATTCTGCTTAAGCTTAGTGTTCAGATTTAATGATCACTTTTAACTTTTCCTTATAGATAATGTATTTTGAATTGTTATAATAGTTTTGTTGCCTTTCCCTGAAATTTCATATTTCTATTTAAAAAATGCTAAAACTTACCATGCACTTTTCTCTAATACCAGTCTAATACCCAATAAAGTAGAAACAACATTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010372:ENSBTAT00000055365:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.302 A=NA C2=0.942
Domain overlap (PFAM):
C1:
PF093326=Mcm10=FE(30.0=100)
A:
NA
C2:
PF093326=Mcm10=PD(60.7=70.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGCCTCGACAATCAGTC
R:
CCGACTCTTGGTCACTGTTGG
Band lengths:
346-1293
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]