GgaINT0077031 @ galGal3
Intron Retention
Gene
ENSGALG00000013641 | MTMR7
Description
NA
Coordinates
chr4:64974251-64975144:+
Coord C1 exon
chr4:64974251-64974377
Coord A exon
chr4:64974378-64974784
Coord C2 exon
chr4:64974785-64975144
Length
407 bp
Sequences
Splice sites
5' ss Seq
GAGGTAATA
5' ss Score
7.96
3' ss Seq
TACTCTCTTCTTTATTTCAGAGA
3' ss Score
8.79
Exon sequences
Seq C1 exon
ATTCTGGAGTGGTATGTACAACCGCTTTGAAAAAGGGCTGCATCCTCGACAGTCAGTCACTGATTATCTGATGGCAGTGAAGGAGGAGACTCAACAGCTGGAAGAAGAGCTGGCAGTCTTAGGAGAG
Seq A exon
GTAATAATTCTGAGCTTATAGCAAACGAAACCCAATTCCACATGTGGAAGAATCTCCCACGTGCCCTATTTCTGCCATGAGGATGTCCAGCCATTGTCCACAACCTCACATACATTGCTAGGAATGCTTTGCTTTTGGCATCCATAGGACACAAAGGTAGACTTCTTTCTTTAATGAATAAAAAGTCATGTGTTGATGCACAAATACTATTCCCAAAACAAATTTTATATCATTCCATAATGCAGTTCTGCGTCAGTTTGTGACAGCATTGTGCCATTTCAATACTCCACAAATAGGCACGTTTAAAGGGTGCCACTTGCGTTGGGCTTTTAAAAGGTAAAGACACTTAAAAGGAAAACTGAGTCCTGAATGTGTGCATGTAATATATACTCTCTTCTTTATTTCAG
Seq C2 exon
AGATTGGCAAATCTTCAAAAATTGCAATTAAATGGTAATAAAGTCAAGAGTAAGCAGCAAGACCGAAGCAAGGAGTTAGCGCTTTCTGCTTCCAGCAACAGCTTAGCTAACACTCCCCAAGAGTACAGCAATGATCTGAAATCATTCCCATCCCGGAGCCCTTCTCAAGGGGATGAAGAAGATTCAGCCTTGATTTTGACACAGGACAACCTGAAAAGCTCTGATCCTGACCTCTCAGCTAACAGTGACCAGGAGTCTGGGGTGGAGGACTTAAGCTGTAGGTCCCCAAGTGCGGGTGGCTGTTTGCCTAGTGAAGACAGTGGCAAGGATTCAGATGAAGCTGTATGCCTGGCAGTTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013641:ENSGALT00000022188:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.891
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGAAGAGCTGGCAGTCT
R:
TGCCACTGTCTTCACTAGGCA
Band lengths:
354-761
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]