HsaINT0106307 @ hg19
Intron Retention
Gene
ENSG00000003987 | MTMR7
Description
myotubularin related protein 7 [Source:HGNC Symbol;Acc:7454]
Coordinates
chr8:17154306-17159789:-
Coord C1 exon
chr8:17159663-17159789
Coord A exon
chr8:17157734-17159662
Coord C2 exon
chr8:17154306-17157733
Length
1929 bp
Sequences
Splice sites
5' ss Seq
GAAGTAAGA
5' ss Score
6.42
3' ss Seq
AATTGTTATTTCTTTCTTAGAGG
3' ss Score
7.15
Exon sequences
Seq C1 exon
GTTTTGGAGTGGAATGTATAACCGCTTTGAAAAGGGGATGCAGCCCCGACAGTCAGTTACAGATTACCTAATGGCAGTGAAGGAAGAAACTCAGCAGCTAGAGGAAGAACTAGAGGCCCTGGAAGAA
Seq A exon
GTAAGACATACTTGCTTTGTTAATCTATTTTCTGTGCTTATTTCTTGAAGAGCAAGGCTTCATGAAAGCCTCTTAAGATTCAGTGCAATACAAATATTTCACATTTTTAGTCAGTAGAACACCTGAAACACAACCCCATCCAGGTCAGGACTCAGATAACCGAAGCCCAAACCTAGGCATTTAATGCATTTCACACATCTGGTTTGTGGCTCAGTTCCACAAATTTTTGGTTGTTCCTTATTTTAGGTCAACTTGTTTGGTTACTGTTATTTGAGAGTAGTAAAATTAATTTTTTTCTGGAAAGTGTGAAAAAGTAACAGAATAAAATCAAATATATGTACTTGTAAAACTCTTTCCCCACTTTTAGAAATTATGTTAACTATGATATTAATCTATAATTGGTAAAGGGGAGACTGACTGTAAAGTCTTATCTTTTGGCTTCTATGAACTTCCCTGTACTTGGACAGGGAGGTTATAATAAAATGCTTTTCCTAATTGGATAACTTTGTTTCCAATGGTACTAATGTAGTTTATGAACATCTTAGGATTCTATTAGTCTATTCTAGCAGTCTGGCTCTTTAAAACTGGCTCTTCCTTATTACAAAGTCAAAATTCCTTAGGCTGGCATTTGAGATTTTCTCTTTTCAGCTTTATTTTCCATGCTAATATTTAATGGTTTTTGCTGCTTGTATACAATTTAGACCTTCCTACCTTTGTGTTTGTCCTCTCACTGTCCCTACTCCTGTCAGGAATGCTTACTAGCTATCACCAGAATGTCCAAGTTTAAATCTTTCACAGTCCTGTTAAAATGTTCCTTCCTCCCTGAAACTTACTCTGTTCTTTTCCTTCTAACCTTACCACTTCATCCCTCTTCAAGAACTTTTGCCTTTTTGAAATTCTTACATTGCATGAACTCTGCCTCTCTCTGCTCCACTACTCCATGTTCCTTAAGGCTGGGTCTGTATTTATCTATCTCTTTTCCTCACACTGCCCAGCACAGTGCTTTTGCACATAACCTAAGTGAATGGTTTTGAATGAATACATAATACTTGATCTTATAACACCTCCTGTGTTAACATCAAAACATGAAATCTGGCGAAATGTATTCTGAACAACCCAGGTGTCCATAACATGATGAATGGGGAAACAAAATCTGGTATATCCATGTAATGGAATACTGTTCAGCCAGAAAAAGGAATGAAGTACTTGATACATGCTGTACCATGAATGAATTCTGAGAACATAAGCTAAGTGAAGGAAGCCAGATACAAAAATCCACATGTTGTATGATTCCATTCAATTTATATAAAACATCTAGACTAGGCAAATCCATAGAGATAGAAGTTGATCAGTAGTAGCCAGGGGCTGTGGGGAGATAGGAATGGGAAATGACTGCTAATGAGTATGGGGTTTTCTTTCGGCAGGGGAGGTGATGACAGTGTTTTATAATTAGTAGTGATCGTTGCACAACCTTGTGAATATAACTAAAAACCACTGAATTGTATACTTTAAAAGGGTGAGTTTCACGGTAAGTGAATTGTATCTCAGTATAAAAGTTAGATGATAAACACTTCATTCATGATTTCTAAAAAATGTTTTTTGAGTTCATGGGATGAGACTCATCATTTGAAACCATGTAGGTATAGAAAAGAGGGAGACTAGGGTTCACTGGGTGCTTCAACTGTGCTATATTGTTTATTATTATAGAAAACCTATGTCAAGGCAGGTATTATCCTTACATTAGAGATAAAGCAGGCCTCACAGATTTTGTCCAAGGTCGTGAAGTCCAGGTTTGAACTCACATCCCTCTGAGTCACATGTTCTTAACATTATACCCACGTGGGAGGTAACAAATGCTAAAGACATGCATATATAGAAAAAGATAAGTTATTTATGATTTTTCCCCTGAAATTGTTATTTCTTTCTTAG
Seq C2 exon
AGGCTGGAAAAAATTCAAAAGGTCCAGTTAAATTGCACTAAGGTGAAGAGTAAGCAAAGTGAGCCCAGCAAGCACTCAGGGTTTTCTACCTCAGACAACAGCATAGCCAACACTCCCCAGGATTACAGTGGGAATATGAAATCATTTCCATCCCGGAGCCCTTCACAAGGCGATGAAGATTCTGCTCTGATTCTAACCCAAGACAATCTGAAAAGTTCAGATCCAGATCTGTCAGCCAACAGTGACCAAGAGTCCGGGGTGGAGGATTTGAGCTGTCGGTCTCCAAGTGGTGGTGAGCATGCACCGAGTGAAGATAGTGGCAAGGACCGGGATTCTGATGAAGCCGTGTTTCTCACTGCCTGAAGTTTCCCTTTGGAGTTCCAAAGTAAAGGACACATAAGCAACACTTCCAAAAACAAGGGAACAAGGTGGTTTATTGTAAAAACAGGAAATGGTGCATGTCATTGAGAACTACTTTAATGCAGCTATGAAAAGGGAAAAAAGTGCCCAGTTCTTGATTTCTTAGATACTGAAGAGGACGTAGTCATTTCATTTATCAAATATAAGGAAAATTATTCACCATTTTGAAGCTCACCCTAGACTATGAAAATTATATTCACTGCAGAGCAATTACTTCTGTCATTACCTGAAGTGATCAGTATCTATCTTCCTTGTCATAGCATGCATCTCTCAAAAAGCCTCCACTCCTTTCCCTCACATCTGTGATCATCATGATTCTTTTAGTTCACTTCTAGATGCATATTTTGTGTTTTCTAAAGCATCTGACATTATCCTCCTTTCCGACCCTCTTATACATATTTCTAAAAACAGGCACATTGGTGAGATGCACCCTTTTTAGTTAATAGATGCATTCCTAAGGAGCTTTTAATTGCTTATCTTTCAGGCATAATCATCACTTTAACTTTTCCTTGGAGCATATATTTTGAATTGTGAGAATAATTTTGTTGCTTTTCTCTGAGATCTATAGTCTGTTTCTCCTCATTATTTAAAAATGCTAAACCTTGTATCTCACTTTTTCTCTAACACTGATTTAATAGCTAACGAGGTAGAAGCAACATTCATTCTCCTGGTCTTACATATGAATTTAAGTATCAGCTTTCTTGTAATAACCTTTTATTACTGTTCTAGAGACTACACTACCGACAGTGTGGGCCAGCCACCAGCCTGATCTCAAAGTATCACATTATAAAGTTAGTAGATAAAACATCTGTGAGTGAAAATCCAGTTTCAAGAACCAGAGAATTGGGTTGTCATGTCTGTTTAATGAAGGGAATAGGTTTTGTAATCTATCATTTTAGAAATTATGTAACTGGCTAATATGGTTTAATTAACCTTAGTAACATCTCATGACCACTGACTGCTGAAAGTTCTGAAAAGAATTTTTGTTTTGTTACACTGCACATTTAAGGGAGAGTCCCTCCCCTATCTTATGAGTTAAAAAAGACTTCACTAGGTGACCTAAATTAAACTTAGTGGGGAAAAGTGGCCATGTTTGGACATAAATAAATGGTATTCACACTGTATGGTTTTAATATATTAGTACATTCTAGAATGTAAAAGGATTAAACTTTACAATTTAGATCAATATTTTGAATATGTGAAAGGATTAATTTAAACTTTACAATTTACATCAATATTTTGAATATCTGATTTTTTTTAATGGGAGAATTATTACATTTCGCTGAAATGAGGACGAGGGCAAGAAAGCAACATTGCTGATCTCTCTAGTATGAAAGATTTGGAGGGAGTGTTGCAATATATATAAATGAAAACATTTAATTGTGTTCATCATATTTAAAAATATAGAATATATTAGAGAACTGTGATTTAAAAGTACTGTTAATGTAAAAAATAAAGCAAGTGTAATTAATTCTTTCAGAATATAAAATTTGGGCATTCTCTGCTGAGCAGTTCCCAAATTAAGTACAAGGAATGTTTATTCATTTTCTGCAATATACTATATGTAATAGGGAATACCTTGCTAAAATAAAACTTAGGATATAGTGGTAATGGCTTTCACATTTTTATAACATAACATAACTCACTTCACAACCTTCTTGGAGCTGTCCACTCTTAGAAACTCTGTTGCCTAATATTGAGGATGTGGCTTTAATTTCTTCCGTTTGACAGTGTATGTCTATAAAAACAATAAACATTTTTTAAAAAATGACAAAGTATCTATGCCAAACAGCACTATGCTTTTATTTGAAAAGCAAATAGTATAAATATTTGATGTTTTAAAATGTAGTTTTTTAATATGACAACTTCCATATCAGAGTCATAAACTTTTAGTCCCCTCAACTTTTTTACAAGACAGACATTATAATTTATGTAACATGTTCGTCTGCTTATTAGAAGTTAACCTAGCACTGAGATTTATATAAAAGGTTACATTTATTGCTTATTAAAACTTTACTGTACTTTCACAGATTCTTCAGAGCATGGCTAACCCAACAAGACTAAAATATCCCCAACAAGACTAAAATATCTAATAATCAAACATTAATCAGGAAGTGTTTTATTGAGAGCAGTGGTTTAAAGCATAGGGAATAATCCAGTATAAAACTGATTTGAGGCATATTACTTCCCAATTAGTAATATATAGAATGCAAGTAATTTATTTTTTAAAGTTGATATGAAATAAATAGGTAAGAATTTTGACCATGACCCAGCAAATCAGTAACTGAGCTTTTTATAGAATGGAAGGTGATGATCAGAGACAGAAACCATAGAATAAATTTTTATTCTTTAAGAGCACATTAGTTTACTTTCTTCTCCTAAAAATGAATCTGAGCTGTCCTTCAATTTAAGCATATATATGTGTCAAGCACCCTCTATTCTGATATAAATTTCCTAGTCTCAATTTATGCCTAGAAATTTCTTTCAACTTTGAAGTGGGTCTGTTTAGTTTATATCTCACTGATTGATTGATTTAGAATTTTCTTCTATTTTAAGATATTAACCTTTAAATCTCTACCTATGACAAATTCGTACACTGATTAGCCTAGTAACTCCTAAGTATTCCTCTTTAATTCTGATTTCTATCTCATCTTGTAAAATCAGAATACAAACTTTCACATGCATTTCATTTTTCCTGTGGCACTGCTTCTCCGATGTGACCAATTTTTATGAAGAAAATATATAGCCATAAAATTAGAAAAAATGGTCACTTAATCTCTGTTGCAAAAACAGAACCCACATTCATACGGGCATATTCAAATGCAGATTCTTTTCATCGTGGGTGACATACATAACCTTTATGTAAACTGATTTGTCTATTTGTTAAATGCAGATAACTGATCACACTGCTCTGTTTCATGACTGGGTTGTAACAAGGTTATCCAATGAATGGTATAGAATGAAACTGGGATAGTTCAACTTTAAAGAATAAAAAACACTGAGATGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000003987-MTMR7:NM_004686:13
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.285 A=NA C2=0.908
Domain overlap (PFAM):
C1:
PF153901=DUF4613=FE(24.6=100),PF061568=DUF972=FE(48.3=100),PF093326=Mcm10=FE(29.6=100),PF039618=DUF342=PU(37.2=74.4)
A:
NA
C2:
PF153901=DUF4613=PD(29.8=42.1),PF061568=DUF972=PD(46.0=33.1),PF093326=Mcm10=PD(61.3=71.9),PF039618=DUF342=PD(60.5=43.0)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAGAACTAGAGGCCCTGG
R:
GCCACTATCTTCACTCGGTGC
Band lengths:
347-2276
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)