RnoINT0095410 @ rn6
Intron Retention
Gene
ENSRNOG00000011420 | Mtmr7
Description
myotubularin related protein 7 [Source:RGD Symbol;Acc:1306608]
Coordinates
chr16:54852834-54856225:+
Coord C1 exon
chr16:54852834-54853160
Coord A exon
chr16:54853161-54855407
Coord C2 exon
chr16:54855408-54856225
Length
2247 bp
Sequences
Splice sites
5' ss Seq
GAAGTAATA
5' ss Score
0.4
3' ss Seq
AGTTGTTATTTATTTTTTAGAGG
3' ss Score
6.88
Exon sequences
Seq C1 exon
TATTAATATAAAATTACTCTTCCTAAGAGATGTTAACTACTCTAGAAGATACCAACCTGAAATTATTACTTTTAGTGGTTGCTTTTTCAACCTTGTAACTTGCTGTTGATTATTAATATAATAATATTGTTGAGCTGTGATACTGAAGACTTGGGATTGTGGGTTTTCAGACTGGGATATGTGCTATTCTTCCTTCTCAGGTTTTGGAATGGGATGTATAACCGCTTTGAAAAGGGGCTGCAGCCTCGACAGTCTGTTACAGATTACCTCATGGCTGTGAAGGAGGAGTCCCAGCAGCTGGAGGAAGAACTGGAGTCCCTAGAAGAA
Seq A exon
GTAATAAGTCTTGCTATTATTTATCTTTTCCTGTGCGCATTTCTTGAATATTACCTCAAGGAAGACCCTTAAGATCTAGAACATAAATACAGCACAAGCCATTTTTAAGTCAGTGGGTCAACACCTAGACAATGAAGCCCAAACTGAAAACTGTTCAGTCATCTGTGTTAGTTTTTGTCTCACTTCAAGTTTGTAGAAATACTTTATTGGTCAGTACATTTTATTTTTCCATCTCTCTCTCCCTCCCCCCCCCCCTTAGTTTTCTTTAAGAAACAAAAAACAAAAGTTCATGAAAATGTGAAAAGGCAAAATTGAATACATTCAACTGAATTGAAACCTGCTGCTCCATTTTAAAAATTACATATTAATACTGCATTGACATATAGATAGCTGAGATTGGCTATGCAGTTTTCATTACTGGACAGAGATGTTGTATTATACATAAATTCCTATTTCTTACTTGCTGTCTTCATCTTAGTGAGTATTATTCATTCTTCCCCATTTATCATAAACTCTACTTTAACATTTGCCCAAGAACTGGGTATAAATTCCTATTGTTTGGAATCTGTATTTTCAAGTTAGAATAAATGTTTTAAATAGAATGAGATGCGGTTGGGGGTGGCTTAGTGGTTAAGAGCACTACTCTCAGAGAAGATCTGGGATTTGGTTCTCAATACCCAGTAGTGGCTCACAACTATAGGTAACTACCGTTCAGGGGCTCTGGTGCCTCTTCTAATCTCTGATGCACGTGGGGTACATACGTACATTCACATTCAGGCACACCACTGGAGCAGTAGCTCTGTGTTCATCAAGATCACTACTTTATAATGAGTCCTGTTGCCTGAGTGCAATATCTTCCAATCCACATGGTCACATGACCCACGAGACCTTGGGCTAAAGAACAAACTCAGAAGTGAGATGAGCTGCAGATTTAACTTAGAGTTTTGGAGGCCAATTTATTTTTCACAAACACATCCAGTTTTCTAAATCTTAGGATCCTGCTTTTTTTGACAAAATTTTGACTGAAAATCTGTAAACTTTAGAAACAAGATATGTAGAATATCAAGAGTACCTTAATATTAAATATTGCTTTATTTCTTTAAAATAGCTAAAGTTTCTTAGCTCATCCTTCCAAGATTTTCCCATAATGCATCATAACTCTTTCTGTTCTTGCTCCCATTTAACTCAACATTTTCTGCTTCTTGCCTTTGTAGCATTCTAACCGCCGCAGTCTAGGTTCTGTGTTTTCAGTCTTGTTATAGGGCTTTCTGTGCTCTTTCCCTCAAAGCCATCCCTCAAACCCATGTGTTGCTCTCTCCATGTGTGCTAGGCCTGCATCTGGGTTCATTGTGTTCCTCTATGTTCCAGCACAGTTCTTCTGCACTAAAACCAAAAGCCCTTAGGAATGCTTCTGCATGTGTAATGTTTAGTTTTCACATACTCCCCTACTTATATTAAAGGATACAGAGGTAAAATGTGTCTGGAGCAGCCCACAGTGATCTGGTGGAGGAACAGTTCTGCCATGGTAAGAGTGTAACTGAGCCCTAAGAAGCAGTGAATTACTGACGCATGACCACAGGTGCATCGTGACAGCAGAAGAGCAAAGGGGCACATGTTATCAGAGACTTGACACAGAATGACACAAAATGCAACTCTTGGGAGGGGGAATTAAATTGTGTACTTTGAAAGGATGCATTTTCTACGGAGTCCTATTTGATGAGATAAATACCTCATTCTTACCTTACAAAAACATATTTAGGGGATGGAGAGGTAGCTCAACAGCTAGGAGCACAGACAACTCTTCCATCAGACCCAGGTTCAATTTTTAACACTCAAATGGCAGCTTACAATCATAAAGGGATCTAACAGCCTCTTTTGACCTCCACAGGTACCAGGCATACACATGGTATACAGATTTATGTACAAGCAAATATCCATATGCATAAAACAAATGTTTTAAAAATGAAAAAAGTTTAGAGTTAATGATGCAAATAATTATGTCAATATATAGTCATTAAAAAGGTGTTGGGGACTGCTTCCAGGCAGTGTAACCATATTGTATCGTTCACATTGGAGACAATCTGTCAGGGTGCTTACTAACATCCTTATCTGAGAGGTGAAAAAAGCAAGCCTCTCAGTTAATTTCGTTCTTAAGTTATCCTGGACTGGGAGGGAGTCAGTAAGACATGCAAATATATATGTAAGAATAAATTGTGAGTTTTCTTAAAGTTGTTATTTATTTTTTAG
Seq C2 exon
AGGCTGGAAAAAATTCAGAAAGTCCATTTAAATGGCGCCAAAGTGAAGAGTAAGCAAAGTGAACCCAGCAAACACTCGGGGTTTTCTACCTCAGACAACAGCACAGCCAACACTCCTCAGGATTACAGTGGGAACATGAAGTCCTTCCCATCCAGGAGCCCCTCCCAGGGTGATGAAGATTCTGCTCTGATTCTAACCCAAGACAATTTAAAAAGCTCAGACCCCGATCTTTCAGTGAATAGTGATCAAGAGTCTGGGGTGGAGGATTTGAGCTGTCGGTCTCCCAGTGGTGGTGAGCATGCACCCAGTGAAGACAGCGGCAAGGACCGGGACTCTGATGAAGCTGTGTTTCTCACTGCCTGAAGTTTCCCTTTGGAGTTCCAAAGTAAAAGACAAACACTTTCAAATTAAGGGGAAAGTGCAATTCGTAATAAAAATGTTGAGAAATGGCAAGTTCCATCCAGAACCATGAAATTAGAGCTGCGAAAATGAACAAAAAATAACAATGCTTTATCAATAGCCAGTTGTTTTATCACAGTATAATAAAGACTGATCACCATTCCCGAGGCTCATCAGACTATGAAAATGATATTCACTACAAAGGACGTCTCTTCCCCTAAGGTTGTCCAGACAAGGCTTCCCTGGCACAGCAGCATGTCTCTGCTTCTAAAGCCCTCCTCTCTTGTCTCTCATACCTGTTAATGTTTGCAGTTTTCTTTTCACTTCCAGATATGGTTTGCGTTCAGAGACATTTGACATTTCCTTCTGCCTTTACCCATATTTTAAAATATAAGTACTGAATACCTCTTTCTGTTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011420:ENSRNOT00000065327:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.349 A=NA C2=0.967
Domain overlap (PFAM):
C1:
PF093326=Mcm10=FE(30.9=100)
A:
NA
C2:
PF093326=Mcm10=PD(60.3=67.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]