HsaINT0106725 @ hg19
Intron Retention
Gene
ENSG00000198788 | MUC2
Description
mucin 2, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:7512]
Coordinates
chr11:1081073-1081558:+
Coord C1 exon
chr11:1081073-1081142
Coord A exon
chr11:1081143-1081420
Coord C2 exon
chr11:1081421-1081558
Length
278 bp
Sequences
Splice sites
5' ss Seq
CCGGTGAGT
5' ss Score
10.9
3' ss Seq
CATCGTGCCCCTGCCCACAGCGA
3' ss Score
9.52
Exon sequences
Seq C1 exon
GTGGTGGTCTTCAAGTCCGATGGCAGTGTACTGCTCAACGAGCTGCAGGTGAACCTGCCCCACGTGACCG
Seq A exon
GTGAGTTGTGCCCCAGGGAGGGGCCCGGGCCCTTCGAGCTCCACTGGGCCTGCAGTGATTCGGACAGTCCAGCCACCTCGGACCCAGGAGGCTGGGTGGGAAGGTTCCACGGGGGGAGGGTCCCTGCGGCACCCAGCAGGCTCCGTCCTGGGTCCTCTGCTGGAGGGGGTGGTGGGAGGGTGACACCCTCCCGCTGCTCACCTGGGCCAGGCAGGTCCCGGGAGCCCCGCCCCTCGCCATGCCCCTTACTGTGTCCCTCATCGTGCCCCTGCCCACAG
Seq C2 exon
CGAGCTTCTCTGTCTTCCGCCCGTCTTCCTACCACATCATGGTGAGCATGGCCATTGGCGTCCGGCTGCAGGTGCAGCTGGCCCCAGTCATGCAACTCTTTGTGACACTGGACCAGGCCTCCCAGGGGCAGGTGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198788-MUC2:NM_002457:11
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(14.8=100)
A:
NA
C2:
PF0009420=VWD=FE(29.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTGGTCTTCAAGTCCGAT
R:
GCCTGGTCCAGTGTCACAAAG
Band lengths:
188-466
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)