DreINT0005231 @ danRer10
Intron Retention
Gene
ENSDARG00000100621 | CABZ01080550.1
Description
NA
Coordinates
chr25:8203596-8203893:+
Coord C1 exon
chr25:8203596-8203662
Coord A exon
chr25:8203663-8203755
Coord C2 exon
chr25:8203756-8203893
Length
93 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TATGTCTCTTTTCCAACCAGCTG
3' ss Score
9.03
Exon sequences
Seq C1 exon
CCTCTGTTTATTAAAGCTGACGGGACGGTGCAACACAATGCAGAAGTTTCACTTCCTTACATGACAG
Seq A exon
GTGAGAGAGAGGATAAGCTTTGCGTTTCTTTTCTGTGCTTTAAACCTACACATATGAAGTGTTTTTCAAACTGTATGTCTCTTTTCCAACCAG
Seq C2 exon
CTGACTTCACAGTGTTCAGGCCGTCATCTTTTCACATCATACTTCAGACTGTCTTTGGGCTGCAGGTGCAGGTACAGCTGGTTCCTCTCATGCAGGTGTACATCACTGTGGATCAGAGCTTCCAGGGCAAGACTTGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100621:ENSDART00000163826:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=PD(13.3=84.6)
A:
NA
C2:
PF0009420=VWD=FE(29.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACGGTGCAACACAATGC
R:
TCTTGCCCTGGAAGCTCTGAT
Band lengths:
177-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]