RnoINT0000875 @ rn6
Intron Retention
Gene
ENSRNOG00000055996 | AABR07006032.1
Description
NA
Coordinates
chr1:214732158-214732450:+
Coord C1 exon
chr1:214732158-214732227
Coord A exon
chr1:214732228-214732312
Coord C2 exon
chr1:214732313-214732450
Length
85 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TCCTCATTTTCTGCCCACAGCCA
3' ss Score
10.02
Exon sequences
Seq C1 exon
GTGATCACAGTGAAAGCCACTGGAGAGGTCTTTGTGAACCAGATCTATACCCAGCTGCCGGTATCCACAG
Seq A exon
GTGAGGGCTGCTCCTGTGATTCTGAATGTGTAGATCTATCCCGTGGGACATCTCCCACCTTGAAATCCTCATTTTCTGCCCACAG
Seq C2 exon
CCAACGCTACCTTCTTCCGGCCTTCAACCTTCTTCATCATTGGCCAGACCAACCTGGGTTTGCAGCTTGAGATCCAGCTGCATCCCATTATGCAGGTGTCCGTGCGCATAGCACCCGAGTTCAGGGGGCTAACCTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055996:ENSRNOT00000085159:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(14.7=100)
A:
NA
C2:
PF0009420=VWD=FE(29.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGATCTATACCCAGCTGCCGG
R:
GGAGGTTAGCCCCCTGAACTC
Band lengths:
167-252
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]