HsaINT1023937 @ hg38
Intron Retention
Gene
ENSG00000215182 | MUC5AC
Description
mucin 5AC, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7515]
Coordinates
chr11:1168483-1168779:+
Coord C1 exon
chr11:1168483-1168552
Coord A exon
chr11:1168553-1168641
Coord C2 exon
chr11:1168642-1168779
Length
89 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CTTGTCCTTTGTGTCCCCAGCCA
3' ss Score
9.77
Exon sequences
Seq C1 exon
GTGGTGGTGATCAAGGCCAGTGGGGAAGTGTTCCTGAACCAGATCTACACCCAGCTGCCCATCTCTGCAG
Seq A exon
GTGAGGGCAGTGGCTTCTTCCCCACCCCGGGGCTGCCTGGGGTCCCGCCCCACAGCCCCCAGCAAAACCCTTGTCCTTTGTGTCCCCAG
Seq C2 exon
CCAACGTCACCATCTTCAGACCCTCAACCTTCTTCATCATCGCCCAGACCAGCCTGGGCCTGCAGCTGAACCTGCAGCTGGTGCCCACCATGCAGCTGTTCATGCAGCTGGCGCCCAAGCTCCGTGGGCAGACCTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000215182:ENST00000621226:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(14.8=100)
A:
NA
C2:
PF0009420=VWD=FE(29.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTGATCAAGGCCAGTGG
R:
CTGCATGAACAGCTGCATGGT
Band lengths:
174-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains