HsaINT0106770 @ hg19
Intron Retention
Gene
ENSG00000198788 | MUC2
Description
mucin 2, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:7512]
Coordinates
chr11:1080281-1080615:+
Coord C1 exon
chr11:1080281-1080398
Coord A exon
chr11:1080399-1080476
Coord C2 exon
chr11:1080477-1080615
Length
78 bp
Sequences
Splice sites
5' ss Seq
GTGGTGAGT
5' ss Score
8.95
3' ss Seq
TGTGCCCCGCTGCCCAACAGTGT
3' ss Score
6.57
Exon sequences
Seq C1 exon
GCACCGTATATGACGACATCGGGGACAGTGGCTGCGTTCCTGTGAGCCAGTGCCACTGCAGGCTGCACGGACACCTGTACACACCGGGCCAGGAGATCACCAATGACTGCGAGCAGTG
Seq A exon
GTGAGTCCCGGGGCCAGGGCTGGGCACAGCAGAGGCTGGGGCGGCTGAGCCCTGACCCTGTGCCCCGCTGCCCAACAG
Seq C2 exon
TGTCTGTAACGCTGGCCGCTGGGTGTGCAAAGACCTGCCCTGCCCCGGCACCTGTGCCCTGGAAGGCGGCTCCCACATCACCACCTTCGATGGGAAGACGTACACCTTCCACGGGGACTGCTACTATGTCCTGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198788-MUC2:NM_002457:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PD(29.8=42.5),PF0009313=VWC=PU(32.8=50.0)
A:
NA
C2:
PF0009313=VWC=PD(65.6=85.1),PF0009420=VWD=PU(18.1=59.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCAGGAGATCACCAATGAC
R:
TGGCCAGGACATAGTAGCAGT
Band lengths:
169-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)