DreINT0005239 @ danRer10
Intron Retention
Gene
ENSDARG00000100621 | CABZ01080550.1
Description
NA
Coordinates
chr25:8199754-8200105:+
Coord C1 exon
chr25:8199754-8199868
Coord A exon
chr25:8199869-8199962
Coord C2 exon
chr25:8199963-8200105
Length
94 bp
Sequences
Splice sites
5' ss Seq
ATGGTAGTT
5' ss Score
2.4
3' ss Seq
AACTGTATTGTTTGCTTCAGTTA
3' ss Score
6.53
Exon sequences
Seq C1 exon
GAACTGTGTTTGATGACATCTCGGACACGGGCTGCATCCCAGCAGAAAAGTGTCAGTGCAAACATGACCGTGTGTACAGCTCTGGAGAGGTCCTGCGCAAAAGCGAGGAAGAATG
Seq A exon
GTAGTTAAACACAGTCCTGTGACAGATACACAATAAACACTACTGCTTTTTGAATCCCAGTGCATTCTGTCTGCAACTGTATTGTTTGCTTCAG
Seq C2 exon
TTACTGTCAGGAGGGAAGCTGGGTGTGTATGAGTATTCCCGGGCCCGGTCTGTGTGCCGTAGAGGAAGGATCTCACTTCACCACATTTGATGGGAAAGAATTCACTTTCCATGGAGACTGTAATTACTTGCTTTCAAAAGTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100621:ENSDART00000163826:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PD(29.8=43.6)
A:
NA
C2:
PF0009420=VWD=PU(36.1=61.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGATGACATCTCGGACACGG
R:
ATCCTTCCTCTACGGCACACA
Band lengths:
177-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]