GgaINT0054943 @ galGal4
Intron Retention
Description
NA
Coordinates
chr5:14168812-14169710:-
Coord C1 exon
chr5:14169593-14169710
Coord A exon
chr5:14168951-14169592
Coord C2 exon
chr5:14168812-14168950
Length
642 bp
Sequences
Splice sites
5' ss Seq
ATGGTAACA
5' ss Score
4.87
3' ss Seq
GAATGCCTTCTTCATTTCAGTAC
3' ss Score
5.95
Exon sequences
Seq C1 exon
GAATGGTATTTGATGACATTAATGGTGCTGGCTGTATTCCCCGTAAGGAATGCCACTGTACATATGAAGGCGAAACTTATGCTCCTGGTACCTCCTTCTCATCTAAATGCAGATCATG
Seq A exon
GTAACATAGTCCCTTTCTCATACTTCTTTTTTAGGGGTGTTACCTAAACATTTTGGAGACAGGGAAAAATTGCTAAATACACCTTAAAAAGAAATGAACTACTTATTAACTGAAGTCCCTTGATTACTTTTTAAGAGGATTTTTACATCCGTTTTCTCCTCAGACTCATAAGCACAATCGTGAGTTTAGATATAGGTACTTCAATGTCAAGACTAGACATTTACAGGGAACAATCAAACTCAAATTGTGAAAAGGCTGAAAGGCTGAAAATACAAGGCTGAAAAGCCATGTATTGTTGTGAATTACTATGTCACATCCTTCACAGCACTGTGTAACACTAGAGTCATGCTAATAGCAACGAGGGGCAATCCTTCATATGCAGCAGAATGGATGCCAGGTTCAAAAGAATTGAATTCTGTCCAACAACTGGAAATAAGAAACATGTTTAAAAATATCATTAATATAAACATCATTTATATTAATGATACTTATTTTGAGATTTCAAAGAAACATGGTTTCTTTGTAAGTATTCTTTTCTCCAAAAGGCAGCATGATCGGCAATGAGGAAAGTTAAGGTGCCCTTATGTCTAATTTCATTTATACATGCACTACCAAGGTTACAGAATGCCTTCTTCATTTCAG
Seq C2 exon
TACTTGTGCAGGGGGTGAATGGACTTGTGTCACCCAGTCATGTCCAGCGACTTGCAGCATCGAAGGAGGCTCCCACATTACAACATATGATGAAAAATATTATTCCTTCTATGGAGATTGTAGCTATGTCCTAACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006740:ENSGALT00000010867:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PD(29.8=42.5),PF0009313=VWC=PU(32.8=50.0)
A:
NA
C2:
PF0009313=VWC=PD(65.6=85.1),PF0009420=VWD=PU(18.1=59.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGTATTTGATGACATTAATGGTGC
R:
TTGGTTAGGACATAGCTACAATCTCC
Band lengths:
254-896
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]