RnoINT0095708 @ rn6
Intron Retention
Gene
ENSRNOG00000019846 | Muc5b
Description
mucin 5B, oligomeric mucus/gel-forming [Source:RGD Symbol;Acc:1561983]
Coordinates
chr1:214785086-214785428:+
Coord C1 exon
chr1:214785086-214785203
Coord A exon
chr1:214785204-214785289
Coord C2 exon
chr1:214785290-214785428
Length
86 bp
Sequences
Splice sites
5' ss Seq
CTGGTAAGC
5' ss Score
8.69
3' ss Seq
TCATGGACTCTCTCCCATAGCAC
3' ss Score
7.71
Exon sequences
Seq C1 exon
GAACTGTGCTGGATGATGTCAGACATTTGGGCTGCCTGCCCCTGGAACAGTGCCACTGTACCCACGGTGGCCACATTTATGCCCCTGGAGAGTCCTTCAACACCACCTGTAGCTCCTG
Seq A exon
GTAAGCTTAACAGCCTGCATGGAGATATGTGGGGTGAGGCTTGCCTTTGCCCTGTTCCCCTTCTGCTCATGGACTCTCTCCCATAG
Seq C2 exon
CACCTGCTTCGGGGGACTGTGGCAGTGCCAGGACCTGCCGTGCCCCGGCACCTGCTCTGTGCAAGGCGGGTCCCACATCTCCACCTTTGATGAGAAACTCTACAATGTGCATGGAGACTGCAGCTACATCCTGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019846:ENSRNOT00000028967:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PD(29.8=42.5),PF0009313=VWC=PU(31.2=50.0)
A:
NA
C2:
PF0009313=VWC=PD(67.2=91.5),PF0009420=VWD=PU(18.1=59.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCTGGAGAGTCCTTCAACA
R:
TGGTCAGGATGTAGCTGCAGT
Band lengths:
174-260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]