BtaINT0096532 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008274 | MUC5B
Description
mucin 5B, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7516]
Coordinates
chr29:51402808-51403214:-
Coord C1 exon
chr29:51403097-51403214
Coord A exon
chr29:51402892-51403096
Coord C2 exon
chr29:51402808-51402891
Length
205 bp
Sequences
Splice sites
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
3' ss Seq
NNNNNNNNCCCTCCCCCCAGCAC
3' ss Score
0
Exon sequences
Seq C1 exon
ACACGGTGCTGGACGACGTCACCCACACGGGCTGCCTGCCCCTGCGGCAGTGCCCCTGCACCCACGGCGGCCGCACCTACGCCCCCGGGGCCTCCTTCAACACCAGCTGCACCTCCTG
Seq A exon
GTAGGTCCTGGCCCGGCCCGGCCCGGCCCCGCCCCGCCCCGCCCCACCCCGCCCCGCCCCGCCCCACCCCGCCCCGCCCCACCCTTCGCCTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTCCCCCCAG
Seq C2 exon
CACCTGTTCCGGGGGACTTTGGCAGTGCCAGGACCTCCCGTGCCCAGGCACCTGCTCCGTCCAGGGCGGGTCCCACATCTCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008274:ENSBTAT00000010897:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PD(28.3=42.5),PF0009313=VWC=PU(35.1=50.0)
A:
NA
C2:
PF0009313=VWC=FE(49.1=100),PF0009420=VWD=PU(6.7=34.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTGGACGACGTCACC
R:
TGGAGATGTGGGACCCGC
Band lengths:
196-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]