HsaINT1023934 @ hg38
Intron Retention
Gene
ENSG00000215182 | MUC5AC
Description
mucin 5AC, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7515]
Coordinates
chr11:1165302-1165760:+
Coord C1 exon
chr11:1165302-1165419
Coord A exon
chr11:1165420-1165621
Coord C2 exon
chr11:1165622-1165760
Length
202 bp
Sequences
Splice sites
5' ss Seq
CTGGTAGGT
5' ss Score
8.37
3' ss Seq
GCACCATCTCTTGCTCTCAGCAC
3' ss Score
6.21
Exon sequences
Seq C1 exon
GGACGGTGCTTGACGACATCGGCCAGACCGGCTGTGTCCCTGTGTCAAAGTGTGCCTGCGTCTACAACGGGGCTGCCTATGCCCCAGGGGCCACCTACTCCACAGACTGCACCAACTG
Seq A exon
GTAGGTCCCAGCCCCCCTCCAGGCCACCAAGGATGTGCTATGGGACAGACCTGCTGGGGGTTGCAACCCAGGCCGGCAGGCTCCCTCGTCTGGGCTACGGTGTAGGCAGGCCTGGGGTGAGACCCGGTCAGCCTCCTGACGCGGAGGCTGGAGGCTGGTCTCCTGGGGCCGGCACCCACGTGGCACCATCTCTTGCTCTCAG
Seq C2 exon
CACCTGCTCCGGAGGCCGGTGGAGCTGCCAGGAGGTTCCATGCCCGGGTACCTGCTCTGTGCTTGGAGGTGCCCACTTCTCAACGTTTGACGGGAAGCAATACACGGTGCACGGCGACTGCAGCTATGTGCTGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000215182:ENST00000621226:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PD(29.8=42.5),PF0009313=VWC=PU(32.3=50.0)
A:
NA
C2:
PF0009313=VWC=PD(66.1=87.2),PF0009420=VWD=PU(18.1=59.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACGGTGCTTGACGACATC
R:
CATAGCTGCAGTCGCCGTG
Band lengths:
246-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains