HsaINT1023982 @ hg38
Intron Retention
Gene
ENSG00000117983 | MUC5B
Description
mucin 5B, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7516]
Coordinates
chr11:1229690-1230143:+
Coord C1 exon
chr11:1229690-1229807
Coord A exon
chr11:1229808-1230004
Coord C2 exon
chr11:1230005-1230143
Length
197 bp
Sequences
Splice sites
5' ss Seq
CTGGTACTT
5' ss Score
4.74
3' ss Seq
CTCACGGCCTCCCTCCCCAGCAC
3' ss Score
8.13
Exon sequences
Seq C1 exon
GCACGGTGCTGGATGACATCACGCACTCTGGCTGCCTGCCCCTCGGGCAGTGCCCCTGCACCCACGGCGGCCGCACCTACAGCCCGGGCACCTCCTTCAACACCACCTGCAGCTCCTG
Seq A exon
GTACTTATGAGCCCACCAGCCTCCGCCTGGGGTGGGGTGTGGAGCTCCTGGTATTTATGAACCCGCCAGCCTCTGCCTGGGGTGGGGGTGTGGAGCTCCTGGTGTGCACCCACCAGCCTCCGCCTGCGGTGGGGGTGTGGAGGGTGGGGCCCACCTCCTCCCGACATGCCGGTTCTGCTCACGGCCTCCCTCCCCAG
Seq C2 exon
CACCTGCTCCGGGGGGCTATGGCAGTGCCAGGACCTGCCGTGCCCTGGCACCTGCTCTGTGCAGGGCGGGGCCCACATCTCCACCTATGATGAGAAACTCTACGACCTGCATGGTGACTGCAGCTACGTTCTGTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117983:ENST00000525715:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PD(29.8=42.5),PF0009313=VWC=PU(32.3=50.0)
A:
NA
C2:
PF0009313=VWC=PD(66.1=87.2),PF0009420=VWD=PU(18.1=59.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGACATCACGCACTCTGG
R:
GGACAGAACGTAGCTGCAGTC
Band lengths:
244-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains