DreINT0099032 @ danRer10
Intron Retention
Gene
ENSDARG00000070331 | muc5.1
Description
mucin 5.1, oligomeric mucus/gel-forming [Source:ZFIN;Acc:ZDB-GENE-120822-1]
Coordinates
chr25:8288589-8288925:+
Coord C1 exon
chr25:8288589-8288706
Coord A exon
chr25:8288707-8288786
Coord C2 exon
chr25:8288787-8288925
Length
80 bp
Sequences
Splice sites
5' ss Seq
ATGGTAACA
5' ss Score
4.87
3' ss Seq
CTGCTACCATTTAAAATCAGTAC
3' ss Score
2.6
Exon sequences
Seq C1 exon
GCACCGTTGAAGATGACATTGGTCAGAGTGGTTGTGTTCCTGTAAACGAGTGTCCATGTGTGCATGATGGCACAGTATATAAATCAGGAGAGTCTTACCAACAAGCTTGCAAATCATG
Seq A exon
GTAACATTTTTACATTATTAGTCATATTTAAAATCATGCATACTTGTACAAATGCTAACACTGCTACCATTTAAAATCAG
Seq C2 exon
TACATGTGATGCTGGACACTGGACCTGCACATACCTGGACTGTCCCGGCACATGCTCTGTTGTTGGAGGTTCTCATGTCACCACTTTTGATGGAAAGAGCTTCACCTTCAGCGGGAACTGCGACTACATCCTCACTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000070331:ENSDART00000153708:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PD(29.8=42.5),PF0009313=VWC=PU(32.8=50.0),PF053758=Pacifastin_I=PU(37.5=30.0)
A:
NA
C2:
PF0009313=VWC=PD(65.6=85.1),PF053758=Pacifastin_I=PD(59.4=40.4),PF0009420=VWD=PU(18.3=59.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGGTCAGAGTGGTTGTGTTCC
R:
TCCAACAACAGAGCATGTGCC
Band lengths:
167-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]