RnoINT0000894 @ rn6
Intron Retention
Gene
ENSRNOG00000055996 | AABR07006032.1
Description
NA
Coordinates
chr1:214729948-214730386:+
Coord C1 exon
chr1:214729948-214730065
Coord A exon
chr1:214730066-214730247
Coord C2 exon
chr1:214730248-214730386
Length
182 bp
Sequences
Splice sites
5' ss Seq
GTGGTATGT
5' ss Score
7.64
3' ss Seq
GTCCTTCTTCCTACATGCAGCAC
3' ss Score
8.35
Exon sequences
Seq C1 exon
GTATGGTGCTTGATGACAGTAACCAGACGGGCTGTGTCCCTGTGTCCCAGTGTGCTTGCCTGTACAATGGGACATTGTATGCACCGGGTACCAGCTATTCTACTGACTGCACCAAGTG
Seq A exon
GTATGTTTTGGATTCCCCATTCAAGACCCTGGCACATACTTTCTTCCTCGGGATTTGTGAACTTGTTAGGTCCCAGGATGATGTGGCCAGTGCCCCATGGGCAGGAGCCTTCAGTTTGGTGGCAAAAATCATAGGAGTGTGTATGGGACTAGTACACAATATGTCCTTCTTCCTACATGCAG
Seq C2 exon
CACGTGCTCTGGAGGTCAGTGGAGCTGCCAGGAAGTCCCATGCTCTGGTACCTGCTCAGTAATGGGAGGCTCCCACATCTCCACGTTTGATGAAAGGCAGTACACAGTACATGGGGACTGCAGCTACGTGCTGTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055996:ENSRNOT00000085159:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PD(24.6=42.5),PF0009313=VWC=PU(29.4=50.0)
A:
NA
C2:
PF0009313=VWC=FE(67.6=100),PF0009420=VWD=PU(17.9=59.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGCTTGATGACAGTAACCA
R:
GTAGCTGCAGTCCCCATGTAC
Band lengths:
242-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]