HsaINT0106813 @ hg19
Intron Retention
Gene
ENSG00000117983 | MUC5B
Description
mucin 5B, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:7516]
Coordinates
chr11:1255435-1255910:+
Coord C1 exon
chr11:1255435-1255535
Coord A exon
chr11:1255536-1255758
Coord C2 exon
chr11:1255759-1255910
Length
223 bp
Sequences
Splice sites
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
3' ss Seq
TACCTGCCTGGGCCCCACAGTTC
3' ss Score
5.95
Exon sequences
Seq C1 exon
GGTGTGCAGCCCCCATGGTGTACCTGGACTGCAGCAACAGCTCGGCGGGCACCCCTGGGGCCGAGTGCCTCCGGAGCTGCCACACGCTGGACGTGGGCTGT
Seq A exon
GTGAGTTCCATGCTTCAGGGAGGGGTGGGCAGGGAAGGGGTCCCAGCTTTCCCAGCTCCCGAGCCCAGGGATCTGGTGGTCCTGGAGACACTTACCCACCTGGAAGCTCCGCCCTGGCCCATGCGTTGCCCTGGGTGCTGCTGGGTGCGCCTGTCCCAGAGGGTGAGTGACATCTGCCCACCCTGGTGTCCAGCCCTGACCGGTACCTGCCTGGGCCCCACAG
Seq C2 exon
TTCAGCACACACTGCGTGTCCGGCTGTGTCTGTCCCCCGGGGCTGGTGTCGGATGGGAGTGGGGGCTGCATTGCCGAGGAGGACTGCCCCTGTGTGCACAACGAGGCCACCTACAAGCCTGGAGAGACCATCAGGGTCGACTGCAACACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117983-MUC5B:NM_002458:20
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PU(51.6=94.1)
A:
NA
C2:
PF0182612=TIL=PD(45.2=54.9),PF0009313=VWC=PU(33.9=39.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTGCAGCCCCCATGGT
R:
CAGGTGTTGCAGTCGACCC
Band lengths:
252-475
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)