HsaINT0106814 @ hg19
Intron Retention
Gene
ENSG00000117983 | MUC5B
Description
mucin 5B, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:7516]
Coordinates
chr11:1255759-1256453:+
Coord C1 exon
chr11:1255759-1255910
Coord A exon
chr11:1255911-1256314
Coord C2 exon
chr11:1256315-1256453
Length
404 bp
Sequences
Splice sites
5' ss Seq
CTGGTGGGT
5' ss Score
6.29
3' ss Seq
ACCATTGTGGCCCCTTGCAGCAC
3' ss Score
8.21
Exon sequences
Seq C1 exon
TTCAGCACACACTGCGTGTCCGGCTGTGTCTGTCCCCCGGGGCTGGTGTCGGATGGGAGTGGGGGCTGCATTGCCGAGGAGGACTGCCCCTGTGTGCACAACGAGGCCACCTACAAGCCTGGAGAGACCATCAGGGTCGACTGCAACACCTG
Seq A exon
GTGGGTCGTGAGTCTCTCGGAGGCAGCAGGTGGGGAGGGCGGGGGCGGGGAGGGCAGCGGGTGGGGAGGCAGCGGGCAGGGAGGGCAGGGGGCGGGGAGGGCAGGGGGCCAGCTGGCCAGGGTGAGGTGGGGCCGTGGCAGGAGAGAGAGTTGCTAGGAAAGCCATGGGCCGTCCTGTGCGTCCTCTGGAAGGTGGCCCAGGGGCCGTGGTGCTACCAGGAGCCTGGTGGGGCTGCGTGCCCTGCATTCACAGTGGGGGACACCACTTCTTCCACGGAGGAGGGGTCAGGCTGGGCCTGGGGAGGCTGAGGCCCCGTGCTGACCTGCACAGGCCTGGGTGCCGGGTCTCAGGAAGGCCGGGAGAGCAGGCCCCTGTGAGCAGGCACCATTGTGGCCCCTTGCAG
Seq C2 exon
CACCTGCAGGAACCGGAGGTGGGAGTGCAGCCACCGGCTCTGCCTGGGCACCTGCGTGGCCTACGGGGATGGCCACTTCATCACCTTTGATGGCGATCGCTACAGCTTTGAAGGCAGCTGCGAGTACATCTTGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117983-MUC5B:NM_002458:21
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PD(45.2=54.9),PF0009313=VWC=PU(33.9=39.2)
A:
NA
C2:
PF0009313=VWC=PD(64.4=80.9),PF0009420=VWD=PU(18.8=59.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGCGTGTCCGGCTGT
R:
GCCAAGATGTACTCGCAGCTG
Band lengths:
278-682
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)