BtaINT0096545 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008274 | MUC5B
Description
mucin 5B, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7516]
Coordinates
chr29:51397931-51398533:-
Coord C1 exon
chr29:51398382-51398533
Coord A exon
chr29:51398070-51398381
Coord C2 exon
chr29:51397931-51398069
Length
312 bp
Sequences
Splice sites
5' ss Seq
CTGGTGTGT
5' ss Score
4.96
3' ss Seq
CCGCCTCTCCTTGCCCGCAGCAC
3' ss Score
10.91
Exon sequences
Seq C1 exon
TTCAGCACTCACTGTGTATCGGGCTGTGTCTGCCCCGTGGGGCTGCTGTCCGACGGGAGCGGAGGCTGCGTGGCCGAGGAGGACTGCCCTTGTATGCACAACGAGGCCGCCTACAAGCCCGGGGAGGTCATCAAGGTCGACTGTAACACCTG
Seq A exon
GTGTGTGGAGGGGCCACGGAGGGCGGTGCGGGCCAACAGCACAGGGAGAGCTGGCCCCGGGCGGTCTGCTCTTCCCTGGACCAAGCCCAGGGCCTGGCCTCCTCTGCCCAGCAGATGGCAGGGCCAGTTAAAGCCGCCCCCATGACTGCCTGCACCCCGGCACTGAGCGTTGAGGGTGGGCCAGGGTGTGGGGTGTGGGACTCCCTGCTTTGTGAACCCCTGGAGCCCTGGGGGGGCAGCACCGCCTCCTGCTTTATGGAAGAGGGGCTGGATCCACGTCCTTGTCACGGCACCGCCTCTCCTTGCCCGCAG
Seq C2 exon
CACCTGCAGGGGCCGCAGGTGGGAGTGCAGCGACCGGCCCTGCCTGGGCACCTGTGTGGCCTATGGGGACGGTCACTTCCTCACCTTCGACGGTGAGCGCTATGGCTTCGAGGGGAGCTGCGAGTACACGCTGGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008274:ENSBTAT00000010897:39
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PD(45.2=54.9),PF0009313=VWC=PU(40.0=39.2)
A:
NA
C2:
PF0009313=VWC=PD(58.0=61.7),PF0009420=VWD=PU(15.1=59.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTCACTGTGTATCGGGCTG
R:
CTGGGCCAGCGTGTACTC
Band lengths:
286-598
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]