HsaINT1023946 @ hg38
Intron Retention
Gene
ENSG00000215182 | MUC5AC
Description
mucin 5AC, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:HGNC:7515]
Coordinates
chr11:1176514-1177066:+
Coord C1 exon
chr11:1176514-1176665
Coord A exon
chr11:1176666-1176927
Coord C2 exon
chr11:1176928-1177066
Length
262 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGC
5' ss Score
6.73
3' ss Seq
GACCCCCAGATGTCCCCCAGCAC
3' ss Score
0.63
Exon sequences
Seq C1 exon
TACAGCCCCCAGTGTGTGCCTGGCTGCGTGTGCCCCGACGGGCTGGTGGCGGACGGCGAGGGCGGCTGCATCACTGCGGAGGACTGCCCCTGCGTGCACAATGAGGCCAGCTACCGGGCCGGCCAGACCATCCGGGTGGGCTGCAACACCTG
Seq A exon
GTATGCCGGGGGCTCAAAGCCCATGGGGGGTGTCAGGCCCAGGAAACCAGAGGCCCTCCTTAAAGACGGGCGAGCCCCCAGCACAGGGGTCCCGGGAAAACGCAGGGCACAGACTCAGGGCTGGACGCCACCAGCAGCCCCAGCCAGGGAGGCCCAGTGGGCGCGTGTCTATGGTGCCAGGTCCCCCCAGGGGTAGGAAGGCTGCACCCAGTCAGGCAGGCACCCTGTGTGTGCTCTAGCCTGACCCCCAGATGTCCCCCAG
Seq C2 exon
CACCTGTGACAGCAGGATGTGGCGGTGCACAGATGACCCCTGCCTGGCCACCTGCGCCGTGTACGGGGACGGCCACTACCTCACCTTCGACGGACAGAGCTACAGCTTCAACGGAGACTGCGAGTACACGCTGGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000215182:ENST00000621226:21
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0182612=TIL=PD(45.2=54.9),PF0009313=VWC=PU(32.8=39.2)
A:
NA
C2:
PF0009313=VWC=PD(65.6=85.1),PF0009420=VWD=PU(18.5=59.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAGCCCCCAGTGTGTGC
R:
CTGCACCAGCGTGTACTCG
Band lengths:
291-553
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains