HsaINT0106816 @ hg19
Intron Retention
Gene
ENSG00000117983 | MUC5B
Description
mucin 5B, oligomeric mucus/gel-forming [Source:HGNC Symbol;Acc:7516]
Coordinates
chr11:1256533-1257792:+
Coord C1 exon
chr11:1256533-1256643
Coord A exon
chr11:1256644-1257615
Coord C2 exon
chr11:1257616-1257792
Length
972 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGA
5' ss Score
7.66
3' ss Seq
AGCGTCTGCCTCCCCTGCAGAGC
3' ss Score
9.04
Exon sequences
Seq C1 exon
GACTACTGTGGGGACAACACCACCCACGGGACCTTCCGCATCGTCACCGAGAACATCCCCTGTGGGACCACCGGCACCACCTGCTCCAAGGCCATCAAGCTCTTCGTGGAG
Seq A exon
GTGAGAACGGCCCCAGCTGTGAGCACCCCCGACCCTGCAGCCAACGAGCCGGCCCCCAGGGAAGCTTCGTGAGGCTTTAGCTGCACCCACAGGTTCTCAGCAGTGTCCTGGCCCCGGGCTGCTGTTCCAAGCAGCCACAAACCAGGGGGCTTAGACAACAGAAATGCATTCTCAGTCCTGGAGCCGGAAGTCAGAGATCCAGGCGGGCAGGGCCACACTCCCTGTCGAGGGTCTGGGGAGGTCCTTCCTGCCTCTCCCAGCTTCACAGGCGGCAGGCGTCCCTGGGCTGTGGCTGCCTGTGGCCTCCCGCTGTGTCTGCGTCTGTCTTCTCTCTGTTTTTCTCTTCTGTCTCTTGTAAGGACACTGGTCATTGGATTTAGGGCCCCCCCCCGCCCCCACGTAGTCCAGGATGATCTCATTTCAAGATGCTTCACTTAATCCCGTCTGCAGAGATGCTTTCTCCCAGTGAGGGCCCGGGCTGAGGTTCTGGGAGTTCGCATGTGGACAGGCATTTTCAGGAGCCACGATTCACCCTGCCACACCTAGAGACACCCACTCCAGCAAAGGGGGGCCAGAGCTCCCAGGGGATAAAGCAGCGCCGCTGGCCGGGATGCTCCCTGCAGATGGCGGGAGGGGCTGAGGACCGCAGCGGGTCAGGGGAGGCTGGTGTGAGGGCGTGGGGGCTGCAGGGCTGGATGGGGAGCAGGGTGGGGTGGAGTGGGCCTACTGCAGCCTCTGCTGCTCCCGTGCAGCCCCAAGGTTCCCAGGCAGCCCCTGTTCCCAGCACTTCCTGGCCAGCCTCTTGCCAAACCTTCGCTGAGGGTCTCACGGACCCAGCTCACCCCTAACGCCAGCCGCTTGTGCTAAGAGCCCGTGCGCACCTGCAGAGCACTGGGTGGGGCATCCCTGGGTCTCAGGCCCCTCCCTGGGGGCCACAGGGTCGGCTTCCGGCAGCGTCTGCCTCCCCTGCAG
Seq C2 exon
AGCTACGAGCTGATCCTCCAAGAGGGGACCTTTAAGGCGGTGGCGAGAGGGCCGGGTGGGGACCCACCCTACAAGATACGCTACATGGGGATCTTCCTGGTCATCGAGACCCACGGGATGGCCGTGTCCTGGGACCGGAAGACCAGCGTGTTCATCCGACTGCACCAGGACTACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000117983-MUC5B:NM_002458:23
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.050 A=NA C2=0.005
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(24.2=100)
A:
NA
C2:
PF0009420=VWD=FE(38.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTACTGTGGGGACAACACC
R:
CTTGTAGTCCTGGTGCAGTCG
Band lengths:
288-1260
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)