GgaINT1001047 @ galGal4
Intron Retention
Description
NA
Coordinates
chr5:14099973-14101790:-
Coord C1 exon
chr5:14101677-14101790
Coord A exon
chr5:14100059-14101676
Coord C2 exon
chr5:14099973-14100058
Length
1618 bp
Sequences
Splice sites
5' ss Seq
GAGGTACGT
5' ss Score
10.2
3' ss Seq
AAGTCAGTAGCTGTTTGTAGCCT
3' ss Score
-5.57
Exon sequences
Seq C1 exon
AACCATTGCGGGAAGAGTGACACAGTGAATGGGACCTTCCAGGTTATCACTGAAAATATTCCCTGTGGCAGCACTGGGACAACTTGCTCAAAATCTATCAAAGTTTTCTTAGAG
Seq A exon
GTACGTAGGTATTGCATTACAGACCAGGAGTTTTTTGTTGTGTATCTGTATAAGGCTTGGGAGAAGTCAGAATATCCATTGCTGCAAGGAAGTTTGGAGAAAATATTTTAAAAAGCAAATCAACTTGTAAATTAAGCTTAAACTAGAATCAGGTGAAGTATTCAGTACAGCTTCCCAGATTTCTGCCTATTCCACCCCTACAAAGCCATCTTATACTTAACCTTGGACAAAGTACATCTCTACAGGAAAATAACCTGTTGCAGAAATTTGGCTGAACACATTAGAAGATTATCTTACTCTGTGTACTGTAGTTCCTTCATGACTACTGTGACATCCTTTTTTAGTCTACAATCTGCTTCATTTAAAATACATTTTTACCACAATTCCGTGAACCTGAGATTTGAACCACACTGTTAAGATTTATTGCGTTCGGATGACGTATTTTTATTAAACAAACTGGTTTTAATACTCTTAAAAGTGGGGAAAAAAATGTTTAATAGCACAGCTGTAGCTATTAGGTTCATGTCTGATCACCTTTTCCTCCTGTTTCAGCACTATGAACTGGTACTCAGTGAGGAGCGTGTCAGTGTGATAAAGAGAGGACAAGATGGTGAAGTACCATTCACAGTCCGCTATATAGGTATGTACACAGTGATTGACACCACCAGCGGACTGATCCTCATGTGGGACAAGAAAACCAGCATCTTCATCAAGCTGAGCCCTGAATTTAAGGTGTGGACCTAGTAGTTTAAGTCTAGATTTGGACTGGGTGTTAATTTTTTATCTGACTCAAACAATATCCCAAAGAGGTGATTCCTCTAGCATTCCTGTAGGACATCATATGTTGTTTTCTATTCCTTTGGTACCTTAGGAAGACATGTAAAAATCCTGCTGCTGTTTTGAGTAGTCAAGGCAGCATTCAGTTTCTATTTGTCCTGACAGAACCCGAGTTGGTAAACTGCTTTTGTGGACTAGACTTTGTTAAAATTACTCTCTGAATCTTGGTAAAGATTATCAGACTTCGCTAAGACTACATAGCTACATGTGTAGAAATCAATTCAGTAGTCCTGATCTTGAAAAATCATCCATTGTTTCCAGTACATATTGACACATAAATCCAAATTATTATACTCCAGGAACAAGGAAGTAAAATGCTATGTAAAATGTTATGTATTTTTCAAGTGTATATATGAACAAGTGATAAAGAAAGTACGGACAGAAATATGAAGCTTGGATTCACAGAGAAAGCTTAGCATCTGTTATAGCCTATCACCATTTCACATATTGAAATTTGGAATGAGGTATTTCTGGAAATGTAAGGAAAATGTCATTTATTTTTCCATCTGTCAGCAGTTGTAACAGTAGATTCAATGAGTAGATTATGCGGGTGGACTGGCAGTACTTAAGACAGCTTTGTAAGACTTGTCTTTTGTATGAACATCTATTGTATAAAACAAAACATAAATGAAAAGCATTATGGCGCTGTCAACTAGCTGAGTCCTCATTTCCCTTGTTAAAGATGTACCTAAAAGTTGGTACATCCTCAAAAATGGATAAAATGACCAAGACAGTTGTACTGTTCAGATTTAAAAGAAGGAAAGTCAGTAGCTGTTTGTAG
Seq C2 exon
CCTTGGTCATGTTCAGTTGCTGAGGAAACAAATGGCTGCTTTTCCGGAATATCTAAACCTAAAATATCTTCAGTGGGAATCTTTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006740:ENSGALT00000010867:58
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACCATTGCGGGAAGAGTGAC
R:
CCAAAGATTCCCACTGAAGATATTT
Band lengths:
200-1818
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]