DreINT0099046 @ danRer10
Intron Retention
Gene
ENSDARG00000070331 | muc5.1
Description
mucin 5.1, oligomeric mucus/gel-forming [Source:ZFIN;Acc:ZDB-GENE-120822-1]
Coordinates
chr25:8295657-8296039:+
Coord C1 exon
chr25:8295657-8295764
Coord A exon
chr25:8295765-8295859
Coord C2 exon
chr25:8295860-8296039
Length
95 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGA
5' ss Score
4.74
3' ss Seq
AACCATTCCATATTCCGCAGAGA
3' ss Score
7.77
Exon sequences
Seq C1 exon
GATTATTGTGATGGAAACCCCAGTCCCTCTTTCCGCCTTGTCACCGAAAACATCCCCTGTGCAACAGCCAACTCCATTTGCTCCAAGTCTATTAATCTTTTCTTCGGG
Seq A exon
GTGAGATCATTTCATTGCCTTGTCAGCACATGTGTATGACTAACATTTGCAATATAAAAAATATATTATAAGACTAACCATTCCATATTCCGCAG
Seq C2 exon
AGATATGAGATGATTTTATCAGAGGATGATGGCGTGAAAGTTGTTGAAGGCAACGGCACAGAATACAAATATCAAATCAATTATGGAGGCATATATGTGGTCATAGAGATCGAAGGTCTTCTGAACCTAATCTGGGATGAGAAAACAAGTGTGATGATCCAGCTCCATCCCAAATTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000070331:ENSDART00000153708:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(23.5=100)
A:
NA
C2:
PF0009420=VWD=FE(39.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAACCCCAGTCCCTCTTT
R:
ATTTGTATTCTGTGCCGTTGCC
Band lengths:
167-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]