RnoINT0095722 @ rn6
Intron Retention
Gene
ENSRNOG00000019846 | Muc5b
Description
mucin 5B, oligomeric mucus/gel-forming [Source:RGD Symbol;Acc:1561983]
Coordinates
chr1:214790983-214792044:+
Coord C1 exon
chr1:214790983-214791096
Coord A exon
chr1:214791097-214791864
Coord C2 exon
chr1:214791865-214792044
Length
768 bp
Sequences
Splice sites
5' ss Seq
GAGGTTAGT
5' ss Score
7.15
3' ss Seq
CTGTATCTCTCCATCTACAGAGC
3' ss Score
9.75
Exon sequences
Seq C1 exon
GACTACTGCAGAGGCAACACCAGTACTGATGGGACCTTCCGTATTGTCACTGAGAATGTCCCCTGTGGGACCACAGGAACCACCTGCTCCAAGGCCATCAAGATCTTTGTGGAG
Seq A exon
GTTAGTACATTTGTAGCCATTGGGAACTGCCTCCTTTCCTCTGCAGCTCCATTCCTGGTTCTCCAGCCAGGAAGTCTTCTCAAAGGAAGGATAATGAGAGACCCAAACTGGAGACTTATAATGGATTCTACCGTCTTCCATCCTTCCTCCAGAGTTAGAGCAAGGTTAGCAAGGTCTTGCTCCATATAGGTCAGGAGGATCCTTCCTGCCTCTCTGAGCTACGGGCTCCAGGAGTCCTTGGTGTGTGGCAGCATTGCTCCAGTCTGTCTCTAACTAATCATGACCTTCTGTTGTATGTCTGTATGTCTCTGGCCACAACAAGACAGACATTAGACTTAGGGGACACTCAGGTAATTCCAGACAGCTTACCTCAAGATCTTCCAATGGCTCTTTTTTTTTAGTAGTGTTGTTTTTCACATCCTTGGAATTACTTGGCATATTTGGGAAGGATATCATACCCAGTACCTTACTTCTGGCTGAGTAAAGTCAGATTTCACAGAGCAGAAAGCAGAGCTGCTGGCTTGGGATGCATCCCTTCCAGAGTGGAGGAAGGCAGCATCAGGTCACCTGAGGTGGGTGAGGGATGGTGTGAGACAGCAGTGCACATGTGAGCTTTTGGAGATCTGCAGCTATGTGGCTTGACTCTCTCCACCCCTCACATAGCAAGTCTTCATCTGCTGAGGTGTCCTCCAAGGGGAGCAGGCAAGCTCTTCATTTCTTAGCTCCCTGAAACCATTGCTGCCCTGTACTGTATCTCTCCATCTACAG
Seq C2 exon
AGCTATGAGCTGATCCTTCATGAGGGGAACTTTAAGGTGGTAGCGCGAGGGCCAAGTGGGGACCCTCCGTACAAGATCAGATACATGGGCATCTTCCTGGTCATTGAGATCCGGAGTGGGATAGTCGTGTCCTGGGACAGGAAGACCAGTGTGTTTGTCCGGCTGCAGCAGCATTATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019846:ENSRNOT00000028967:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009420=VWD=FE(24.5=100)
A:
NA
C2:
PF0009420=VWD=FE(39.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGGCAACACCAGTACTG
R:
CTGCTGCAGCCGGACAAA
Band lengths:
278-1046
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]